Gene Shew185_0789 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_0789 
Symbol 
ID5371734 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp923040 
End bp924080 
Gene Length1041 bp 
Protein Length346 aa 
Translation table11 
GC content42% 
IMG OID640828983 
Productporin 
Protein accessionYP_001365009 
Protein GI152999328 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.29455e-09 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAGA CATTCATCTC TGCATCAGTT GCATCAGTAT TGGCATTGGC TTCATTCGGT 
GCGCTAGCCG AAGGCCCAAG CTTCTATGGT CGTTTAGAGC TTGCTTTAAC CCATACTGAC
ACTGGCGCTA CCCTACAAAG CGGTACTAAC GGTCTTGATA TTGGCGAAAA AGGCACTTAT
TTAGAAAACA ACTTTTCTCT ATTAGGTGTT AAAGGCTCAG AAAAAATCGC CGATGGCTTT
GACGTTATTT ACCAAATGGA ATTCCAAGTT GAAAACACTT CCAGCAAGGG AGATGTTTTT
AAAGCGCGTA ATACTTATTT AGGTTTGAAA ACTAACGCAG GTACAGTGTT AGTGGGTCGT
AACGACACAG TATTCAAACA AGCCGAAGGC GGCGTGGATA TTTTCGGTAA CACTAACGCC
GATATCGACC GTCTAATCAG TGGTCAAACA CGTAGCGCTG ATGGTGTATG GTATTACTCA
CCAAAAATCG CTGGCTTAGT GACATTAAAC GCAACTTATT TATTCGATGA TAATGACACT
ACTGCGAAAA CCACAGAAAG CCTATATGCA TTAAGCGCAA CTTTAGGTGA TAAAGCGTTT
AAAGCACAGA ACTATTATGC AGCCGTAGCA TATAACAAAG GTATCGATTC AATTGAAGCA
TACCGTGGTG TGGCTCAAGT TAAATTGGGC CAATTCAAAG TCGGTGGTTT ATTCCAAAAC
TCTGAAAGTA TTACAGACAG CTCTGTTGAC GGTAACACAT ATTTTGTTAA CGTTGCGTAT
GACCTGAACG GTGTAAACCT GAAGGCCGAA TACGGTGTTG ACGAAGCTGG CTTTGGTAAA
TACTACAAAG CACTAGGCAA AGCTGGTGCT GATGATATCA ACGTACAAAA CTTCAACGTA
GGTGCAGACT ACCGTTTATC TAAATCAACT ATGGTATATG GCCAATACGC TATGTACAAA
GGCGATTATA AAGATGCCGG TGCTAAGTTT GACCTAGAAG ATGACAACGT ATTCTCTGTA
GGCGTACGTT ACGACTTCTA A
 
Protein sequence
MKKTFISASV ASVLALASFG ALAEGPSFYG RLELALTHTD TGATLQSGTN GLDIGEKGTY 
LENNFSLLGV KGSEKIADGF DVIYQMEFQV ENTSSKGDVF KARNTYLGLK TNAGTVLVGR
NDTVFKQAEG GVDIFGNTNA DIDRLISGQT RSADGVWYYS PKIAGLVTLN ATYLFDDNDT
TAKTTESLYA LSATLGDKAF KAQNYYAAVA YNKGIDSIEA YRGVAQVKLG QFKVGGLFQN
SESITDSSVD GNTYFVNVAY DLNGVNLKAE YGVDEAGFGK YYKALGKAGA DDINVQNFNV
GADYRLSKST MVYGQYAMYK GDYKDAGAKF DLEDDNVFSV GVRYDF