Gene Shew185_0706 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_0706 
Symbol 
ID5369714 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand+ 
Start bp847095 
End bp847751 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content46% 
IMG OID640828900 
ProductSel1 domain-containing protein 
Protein accessionYP_001364926 
Protein GI152999245 
COG category[R] General function prediction only 
COG ID[COG0790] FOG: TPR repeat, SEL1 subfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.00465752 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAGTAT TCACCCTATT GTCATTGAGA GTCGTTATGC TACGTACAGC ACTAGTTGCG 
CTACTGCCCT TAGTATCTTC AATGTGCTTT GCCCAAACGC AGGCGGTGGA TATTTATAGC 
CAAGATCAAT TGCTTGATTT GATCCGAAGC GATCAATATT TAGCGAAAGT GAAGCGTGAT 
GATTGCCAGT TAGTCCAAGA CATTGAGGCG CGAGCCCAAG TCTTAAAACA GCCTTTATAT 
CAATTCCTGT GGGGCGAAAT GCTCAATTAT GGAACCTGTG TAAAGGCAAA CCCTGTGAAG 
GGTATTGCTT TGTTACGTGA CTCGGCCGAA CAAGGTAGCT CAGAAGCGAT GTTAAAGCTT 
GCCGAGTATT ATCAGAGTGG GAAATTTGTC ATCCGCAATA AAGACAGAGC AGTGCATTAT 
TTACTGCCTG CGGCTGCAAG TGGTGATTTA CCCGCTCGTA TGATGTTAGT GCGTTTATTC 
GGTGAAGGTT ATGGTAGTCC TAGGGATTAC GAGATGGCCT ATCACTGGTT ATATAACGAT 
GTATTTGCGG ACGAGGCGAC GAAGAAAAAA GCCTTGTCTT TACTGCAGGT GTTAGCAGCT 
AAAATGCCCC CCAGTGCAGT GGCGCGGGCC CAGCAAGAAC AGTTGCGAAC CCGTTAA
 
Protein sequence
MQVFTLLSLR VVMLRTALVA LLPLVSSMCF AQTQAVDIYS QDQLLDLIRS DQYLAKVKRD 
DCQLVQDIEA RAQVLKQPLY QFLWGEMLNY GTCVKANPVK GIALLRDSAE QGSSEAMLKL 
AEYYQSGKFV IRNKDRAVHY LLPAAASGDL PARMMLVRLF GEGYGSPRDY EMAYHWLYND 
VFADEATKKK ALSLLQVLAA KMPPSAVARA QQEQLRTR