Gene Shew185_0555 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_0555 
Symbol 
ID5373108 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp639914 
End bp641281 
Gene Length1368 bp 
Protein Length455 aa 
Translation table11 
GC content50% 
IMG OID640828760 
Productmajor facilitator transporter 
Protein accessionYP_001364786 
Protein GI152999105 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value6.5492e-09 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGTAACA ACGGACTTTC GGGTACTGAG AAAAAAGTCG CGTTTTCTTT AGCCAGTGTA 
TTTGGTTTAC GCATGATGGG CTTGTTTATG ATCATGCCCG TCTTTGCACT TTATGGTCAG
CACCTCGAAG GCTTCTCGCC GCTGTGGGTC GGTATTGCTA TCGGCGCCTA CGGTCTGACT
CAAGCTGTGC TGCAAATCCC TATGGGGATT TTATCTGACA AATATGGTCG CAAGCCGATT
ATCCTTATCG GTCTGGTGCT TTTTGCCATT GGTAGCTTGA TTGCCGCCAA CGCTGATTCG
ATTTACGGCG TGGTGTTTGG GCGCGCAGTG CAGGGCATGG GCGCGATTGC CGCTGCCGTG
TTAGCACTGG CGGCGGATTT AACCCGCGAT GAACAGCGTA CTAAGGTCAT GGCGATTATC
GGTATGTGTA TCGGCGGCTC TTTTGCGCTG TCCTTACTGG TCGGCCCGAT TGTGGCACAA
CATGTGGGCT TATCAGGCCT ATTCTTCCTC ACGGCGATTC TCGCTGTGAC GGGCATGTTG
ATCGTGCAAT TTTTAGTACC GAATCCGATT TCCCACGCGC CTAAGGGCGA CACGTTAGCC
ACGCCTGCCA GACTCAAGCG TATGTTGACC GATCCCCAAC TGTTTAGACT CGATGCGGGG
ATCTTTATTC TGCATTTAGT GTTAACCGCG GTATTTGTGG CCTTGCCGCT GGATCTGGTG
GATGCGGGGC TCGTGAAAGA AAAACACTGG ATGCTGTATT TCCCCGCTTT TGTGGGCGCG
TTTTTCCTGA TGGTGCCGTT AATTATCATA GGGGTTAAAC GTAAGAATAC TAAAGCTATG
TTCCAAATTG CCTTAGTGAT CATGATAGTG GCGCTGCTGG CTATGGCTTT ATTCTCTAAC
AACTTATGGG TGTTGAGCTT TGCCGTGGTG CTGTTTTTCA CTGGCTTTAA CTATTTAGAA
GCCTCACTGC CCAGTTTGAT TGCCAAATTT TGCCCCGTTG GCGAAAAAGG CTCGGCCATG
GGCGTGTATT CCACTAGCCA GTTTTTAGGG GCCTTTTGTG GTGGTATGCT GGGCGGTGGC
GCCTTCCAAT TAGTGGGCGC GGTCGGGGTG TTTATTGTTG CAGTGATCTT AATGTCTATC
TGGTTATTCC TGACATTGGG CATGGAAAAT CCCGTGCTGT TAAAGAGTTA CACCTTAGAA
GCCGAAGTCA AAGACAAGGC GCAAGCGCGG GATATGGCGG CTCAGTTATC ACAGCTGATG
GGTGTCGTCG AAGCGATCGT CGTGCTGGAC GAGAAAGTGG CTTACTTAAA GGTTGATGAG
CATTTCGATT TAAGAGAAGC ACGAGCTGTG TTAGGCTCTG CTCAATAA
 
Protein sequence
MGNNGLSGTE KKVAFSLASV FGLRMMGLFM IMPVFALYGQ HLEGFSPLWV GIAIGAYGLT 
QAVLQIPMGI LSDKYGRKPI ILIGLVLFAI GSLIAANADS IYGVVFGRAV QGMGAIAAAV
LALAADLTRD EQRTKVMAII GMCIGGSFAL SLLVGPIVAQ HVGLSGLFFL TAILAVTGML
IVQFLVPNPI SHAPKGDTLA TPARLKRMLT DPQLFRLDAG IFILHLVLTA VFVALPLDLV
DAGLVKEKHW MLYFPAFVGA FFLMVPLIII GVKRKNTKAM FQIALVIMIV ALLAMALFSN
NLWVLSFAVV LFFTGFNYLE ASLPSLIAKF CPVGEKGSAM GVYSTSQFLG AFCGGMLGGG
AFQLVGAVGV FIVAVILMSI WLFLTLGMEN PVLLKSYTLE AEVKDKAQAR DMAAQLSQLM
GVVEAIVVLD EKVAYLKVDE HFDLREARAV LGSAQ