| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0387 |
|---|
| Symbol | |
|---|
| ID | 5372562 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 432944 |
|---|
| End bp | 434350 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640828586 |
|---|
| Product | isopropylmalate isomerase large subunit |
|---|
| Protein accession | YP_001364619 |
|---|
| Protein GI | 152998938 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0065] 3-isopropylmalate dehydratase large subunit |
|---|
| TIGRFAM ID | [TIGR00170] 3-isopropylmalate dehydratase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGAACG CAAAGACCTT GTACCAAAAA GTATGGGATG CACATATCGT TGCTGCTCCC
GAGGGCGAAG CGCCGGTCAT TTATGTCGAC AGACATTTAG TCCATGAAGT GACGTCACCT
CAAGCATTCA GCGGTTTGAA GGTCGCGGGC CGTAAGCTGC GCGCGCCGGA AAAAACCTTT
GCGACTATGG ATCATAATAC TTCTACTCGC AGCGCCAGTT TAGATGCCCT AAGCCCGATG
GCGCGCACTC AGGTGGAAAC CCTAGCGCAA AACTGTAAAG ACTTTGGCGT GCGCTTATAT
GATATTCACC ATCCTAATCA AGGGATTGTG CATGTGATGG GCCCTGAGCT AGGCATTACC
TTACCCGGCA CTGTGATTGT GTGTGGCGAT TCCCATACCG CCACCCACGG CGCCTTTGGC
GCATTGGCGT TTGGGATTGG CACTTCGGAA GTTGAGCACG TGTTAGCAAC GCAAACGCTG
CGTCAGTTAA AAGCTAAAAC CATGAAGATT GAAGTGCGTG GTCATGTCAC CGATGGCGTG
ACCGCCAAAG ATATCGTCCT CGCTATTATT GGCAAAATCG GCATGGATGG TGGCACGGGT
TACGTGGTGG AGTTCTGCGG TGAGGCGATC GAAGCCCTGT CGATGGAAGG CCGCATGACA
GTGTGTAACA TGGCGATTGA GATGGGGGCT AAGGCGGGCA TGGTCGCGCC GGATCAAACC
ACTTTCGATT ATTTAGCAGG CCGCGAGTTT GCGCCAAAGG GCGAAGATTG GGCAGAGGCT
GTCGCTTACT GGAAAGCCAT TAAAACCGAT GACGGCGCCG TGTTTGATGC TATCGTTGAG
TTAGATGCTG CCGATATTGC GCCACAATTG ACTTGGGGTA CTAACCCAGG CCAAGTGGTG
GCAATCGATG GCAAAGTACC TGACCCCATT AATGAAGCCA ACCCAAGCAC CCGAGCTAGT
ATGGAAAAGG CTTTAGAATA CATTGGCCTG AGTGCGGGTA CGCCGATGAC AGATATCAGT
ATCAACAAGG TGTTTATCGG TTCATGTACT AACTCACGGA TTGAAGATTT ACGCAGCGCC
GCTGTACATG CCAAGGGCCG TAAAGTCGCG AGTGGCGTCA CCGCCATTGT CGTTCCAGGT
TCTGGCCAAG TGAAAGCGCA AGCCGAAGCC GAAGGCTTAG ATAAAATCTT TATCGAAGCG
GGATTTGAGT GGCGTTTACC GGGTTGTTCT ATGTGTTTAG CGATGAACGA TGACAGATTA
GAAGCGGGCG ATCGCTGCGC GTCGACCAGT AATCGTAACT TCGAAGGTCG CCAAGGTCGT
GGCAGTCGTA CCCATTTGGT GAGTCCTGCA ATGGCTGCAG CCGCTGCGGT GGCAGGGCAT
TTTGTCGATA TTCGTAAACC TTACTAA
|
|---|
| Protein sequence | MTNAKTLYQK VWDAHIVAAP EGEAPVIYVD RHLVHEVTSP QAFSGLKVAG RKLRAPEKTF
ATMDHNTSTR SASLDALSPM ARTQVETLAQ NCKDFGVRLY DIHHPNQGIV HVMGPELGIT
LPGTVIVCGD SHTATHGAFG ALAFGIGTSE VEHVLATQTL RQLKAKTMKI EVRGHVTDGV
TAKDIVLAII GKIGMDGGTG YVVEFCGEAI EALSMEGRMT VCNMAIEMGA KAGMVAPDQT
TFDYLAGREF APKGEDWAEA VAYWKAIKTD DGAVFDAIVE LDAADIAPQL TWGTNPGQVV
AIDGKVPDPI NEANPSTRAS MEKALEYIGL SAGTPMTDIS INKVFIGSCT NSRIEDLRSA
AVHAKGRKVA SGVTAIVVPG SGQVKAQAEA EGLDKIFIEA GFEWRLPGCS MCLAMNDDRL
EAGDRCASTS NRNFEGRQGR GSRTHLVSPA MAAAAAVAGH FVDIRKPY
|
|---|
| |