| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0362 |
|---|
| Symbol | |
|---|
| ID | 5372021 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 408472 |
|---|
| End bp | 409209 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640828562 |
|---|
| Product | nucleotidase |
|---|
| Protein accession | YP_001364595 |
|---|
| Protein GI | 152998914 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR02254] HAD superfamily (subfamily IA) hydrolase, TIGR02254 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCACTGA ACGGCATGGG GATGGGTCTT AGCTATTTTG TCAGAAAGAG AGTTCCTATG
TCCTTGCCTT ACCAATGGAT TTTGTTCGAT GCCGATGAAA CCCTATTTTA TTTCGATGCC
TTAAAAGGGC TTAAGTTGAT GTTTACTGAG TTTGGGGTCG ATTTTACCCA AGCCGATTTT
GACGAGTATC AGTTAGTTAA CAAACCACTT TGGGTTGATT ATCAAGATGG CAAGATAACT
GCCGCCGAGT TGCAGACCAT ACGTTTCGAA CCTTGGGCAG CCAAATTAGC CGTTACGGCC
ATGACGCTCA ATAGTGCCTT TTTATCAGCA ATGGCCGAAA TTTGTTCGCC GCTACCCGGT
GCCCGCGAGT TATTAGCCGC GCTGCAAGGT AAAGCTAAAC TAGGCATCAT TACCAACGGT
TTCACTGAAC TACAAACCGT GCGATTAGAG CGTACAGGCT TGCAGCATCA TTTTGATATT
TTAGTGATTT CAGAAAAAGT CGGCATAGCC AAACCCGATG TGGGTATCTT CGAGCACGCC
TTCGAACTCA TGGGTCATCC TGAGCGCGAT ACTGTGTTGA TGGTCGGTGA TAACCCGCAT
TCAGATATCC AAGGCGGCAT CAATGCTGGT ATTCATACAT GCTGGTATAA CGTCCACGGC
CACGATGTAC CTACCGGTAT CACCCCGCAC TATCAAGTGA GCTCGCACCA AGAGCTATAT
AGTTTATTGT TCGGGTAA
|
|---|
| Protein sequence | MPLNGMGMGL SYFVRKRVPM SLPYQWILFD ADETLFYFDA LKGLKLMFTE FGVDFTQADF
DEYQLVNKPL WVDYQDGKIT AAELQTIRFE PWAAKLAVTA MTLNSAFLSA MAEICSPLPG
ARELLAALQG KAKLGIITNG FTELQTVRLE RTGLQHHFDI LVISEKVGIA KPDVGIFEHA
FELMGHPERD TVLMVGDNPH SDIQGGINAG IHTCWYNVHG HDVPTGITPH YQVSSHQELY
SLLFG
|
|---|
| |