| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0220 |
|---|
| Symbol | rpsD |
|---|
| ID | 5372315 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 257557 |
|---|
| End bp | 258177 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640828417 |
|---|
| Product | 30S ribosomal protein S4 |
|---|
| Protein accession | YP_001364454 |
|---|
| Protein GI | 152998773 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
|---|
| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00000964484 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGAT ACTTGGGTCC CAAGCTCAAG CTCAGCCGCC GAGAAGGTAC AGACCTTTTC
TTAAAAAGCG GTGTGAGAGC AATCGATTCA AAGTGTAAAC TGGAAACTGC ACCTGGACAA
CATGGCGCTC GTAAGCCACG TTTGTCAGAG TACGGTACTC AGTTACGCGA AAAACAAAAA
GTTCGTCGTA TTTACGGTGT GTTAGAAAAA CAATTCCGTA ACTATTACAA AGATGCTGCA
CGTACTAAAG GCAACACAGG TGAAAACCTG CTTCAGCTTT TAGAAACCCG TCTTGATAAC
GTCGTTTATC GTATGGGCTT CGGTGCAACT CGTGCAGAAT CACGTCAGCT AGTAAGCCAT
AAATCAATTA TGGTTAACGG TCGTGTTGTT AACATTCCAT CATTCAAAGT GTCTGCGAAT
GATGTTGTGA GCATCCGCGA GAAGTCACGT ACTCAAGCTC GTATTAAAGC GGCTTTAGAA
GTGGCAGCTC AACGCGAGAA GCCTACATGG GTTGAAGTCG ACAATGCGAA AATGGAAGGT
GCTTTCAAGC GCGTTCCAGA ACGTAGCGAT TTGTCTGCGG AAATTAACGA ACAGCTGATC
GTCGAGCTTT ACTCTAAGTA A
|
|---|
| Protein sequence | MARYLGPKLK LSRREGTDLF LKSGVRAIDS KCKLETAPGQ HGARKPRLSE YGTQLREKQK
VRRIYGVLEK QFRNYYKDAA RTKGNTGENL LQLLETRLDN VVYRMGFGAT RAESRQLVSH
KSIMVNGRVV NIPSFKVSAN DVVSIREKSR TQARIKAALE VAAQREKPTW VEVDNAKMEG
AFKRVPERSD LSAEINEQLI VELYSK
|
|---|
| |