| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0149 |
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| Symbol | |
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| ID | 5372423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | + |
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| Start bp | 177987 |
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| End bp | 180101 |
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| Gene Length | 2115 bp |
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| Protein Length | 704 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640828337 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001364383 |
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| Protein GI | 152998702 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAACA AAAGGATTCG ACGCAAGCTG ATTGCAGGGA TTGTTGCGGG TGCAGCCATG
TTCTCCTCCC AATTCGCTTG GTCTGAACAG TATGCGGCCA ACTTTAAGGG CACGGATATT
CAAGAGTTTA TCAACATAGT TGGTAAAAAC TTGAACAAGA CCATCATAGT CGACCCGACG
ATCCGCGGTA AAATCAACGT TCGCAGTTAT GATCTGCTGA ACGATGAACA GTATTACCAG
TTTTTCCTCA ACGTCTTACA AGTCTACGGT TATGCCATCG TCGAGATGGA AAATAACGTC
ATCAAAGTCA TCAAAGACAA AGACGCCAAA ACTGCAGCAA TCCGAGTGGC TAATGATGCC
GAACCTGGGA TAGGCGATGA GATGGTCACG CGTATCGTGG CGCTGTATAA CACTGAGGCC
AAGCAATTAG CTCCGCTGTT ACGCCAATTA AATGATAACG CGGGTGGCGG TAACGTAGTG
AACTACGATC CCTCTAACGT CTTGATGTTG TCTGGTCGTG CTGCTGTGGT GAACAAGTTA
GTGGAAATTG TCCGCCGCGT AGATAAACAG GGCGACACCT CAGTACAAGT GGTGCCGTTA
GAGTTCGCTT CCGCCGGTGA AATGGTACGA ATTATCGATA CCCTTTATCG CGCCACGGCT
AACCAATCTC AAATGCCTGG TCAAGCGCCG AAAGTGGTTG CCGACGAACG TATCAACGCT
GTGGTTGTTA GCGGCGACGA AAAGAGTCGC CAACGTGTGG TCGAACTTAT TCATCGTCTC
GATGCCGAGC AAGCCAGCAC GGGCAACACT AAGGTGCGTT ACTTACGTTA TGCCAAGGCC
GAAGATTTAG TTGAAGTGCT GACAGGGTTT GCCCAAAAAT TAGAGGGTGA TAAAGACCCA
AGCGCTCAGG CTGCTGGTGG TAAACGCCGT AATGAAATCA ATATCATGGC GCATACTGAA
ACCAATGCCT TAGTGATCAG TGCTGAACCC GATCAAATGC GCACCATTGA GAGCGTGATT
AATCAGCTCG ACATCCGCCG TGCTCAGGTA CTCGTAGAGG CCATTATTGT CGAAGTTGCC
GAAGGCGACA GTGTCGGCTT TGGGGTGCAA TGGGCGGCGA AAGCGGGTGG TGGCACTCAG
TTTAATAACT TAGGCCCAAC CATTGGTGAG ATTGGCGCTG GTGTATGGCA GGCGCAAGAT
AAAGAAGGCA CATTCATCAC TAACCCGAGT ACTGGTCAGG TGATAGGTCA AAACCCGAGT
ACTAAGGGCG ATGTTACCTT ACTTGCCCAA GCTTTAGGTA AAGTGAACGG TATGGCATGG
GGTGTGGCCA TGGGTGACTT TGGTGCGCTG ATCCAAGCCG TATCCAGTGA CACTAACTCA
AACGTACTGG CGACACCTTC TATTACTACC TTGGATAACC AAGAAGCATC TTTCATCGTC
GGTGATGAAG TGCCTATTCT GACGGGCTCT ACCGCCAGCT CTAACAATAG CAACCCATTC
CAAACCGTTG AACGTAAAGA GGTTGGGGTT AAGTTGAAAG TGGTGCCGCA GATCAACGAA
GGCAATGCGG TTAAGCTGAC GATTGAGCAG GAAGTATCAG GAGTTAACGG TAATACAGGT
GTGGATATTT CCTTTGCGAC ACGCCGTTTA ACCACTACCG TTATGGCTGA TTCAGGGCAA
ATTGTGGTTC TGGGGGGCTT GATCAACGAA GAAGTGCAAG AAAGTGTGCA AAAAGTGCCT
TTCTTGGGTG ACATTCCTAT TTTGGGACAT TTATTCAAAT CTTCTTCGAG CAAAAAGACC
AAGAAAAACC TGATGATCTT CATCAAACCA ACCATTATCC GTGATGGCAT CACAATGGAA
GGGATTGCTG GGCGTAAATA TAACTATTTC AGAGCATTAC AACTTGAGCA GCAAGAGCGT
GGCGTTAACT TAATGCCAAA TACAAAAGTG CCTGTGTTGG AAGAATGGAA TCAATCAGAG
TATTTGCCGC CAGAAGTTAA CGCGATTTTA GAGCGTTACA AAGAAGGCAA AGGTTTAGAT
GCCCAGATGC GCCAAACGGA TCCGACTTTA AAGTCACTGG AAGAAAACAA GAATAAAGAT
AAAACCAATG AGTGA
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| Protein sequence | MNNKRIRRKL IAGIVAGAAM FSSQFAWSEQ YAANFKGTDI QEFINIVGKN LNKTIIVDPT
IRGKINVRSY DLLNDEQYYQ FFLNVLQVYG YAIVEMENNV IKVIKDKDAK TAAIRVANDA
EPGIGDEMVT RIVALYNTEA KQLAPLLRQL NDNAGGGNVV NYDPSNVLML SGRAAVVNKL
VEIVRRVDKQ GDTSVQVVPL EFASAGEMVR IIDTLYRATA NQSQMPGQAP KVVADERINA
VVVSGDEKSR QRVVELIHRL DAEQASTGNT KVRYLRYAKA EDLVEVLTGF AQKLEGDKDP
SAQAAGGKRR NEINIMAHTE TNALVISAEP DQMRTIESVI NQLDIRRAQV LVEAIIVEVA
EGDSVGFGVQ WAAKAGGGTQ FNNLGPTIGE IGAGVWQAQD KEGTFITNPS TGQVIGQNPS
TKGDVTLLAQ ALGKVNGMAW GVAMGDFGAL IQAVSSDTNS NVLATPSITT LDNQEASFIV
GDEVPILTGS TASSNNSNPF QTVERKEVGV KLKVVPQINE GNAVKLTIEQ EVSGVNGNTG
VDISFATRRL TTTVMADSGQ IVVLGGLINE EVQESVQKVP FLGDIPILGH LFKSSSSKKT
KKNLMIFIKP TIIRDGITME GIAGRKYNYF RALQLEQQER GVNLMPNTKV PVLEEWNQSE
YLPPEVNAIL ERYKEGKGLD AQMRQTDPTL KSLEENKNKD KTNE
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