Gene Krad_0680 details

Gene Information

• Locus tag: Krad_0680
• Symbol: rpoB
• ID: 5334198
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Kineococcus radiotolerans SRS30216
• Kingdom: Bacteria
• Replicon accession: NC_009664
• Strand: -
• Start bp: 1597927
• End bp: 1601442
• Gene Length: 3516 bp
• Protein Length: 1171 aa
• Translation table: 11
• GC content: 68%
• Product: DNA-directed RNA polymerase subunit beta
• Protein accession: YP_001360433
• Protein GI: 152964649

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 15
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGGAAGGAC CACTCTTGGC TGCCTCGCTT CCAGCGTCCG CACCGAACAG CACCTACATC 
GGCAACCAGT CGCCGCGCAC CGTCTCGGGA CGGTACTCCT TCGGCAAGAT CCACGAACCC 
CTGGAGGTCC CCGACCTCCT CGCCCTGCAG ACCGACAGCT TCGACTGGCT GCTCGGCAAC 
AAGCGGTGGC AGGACCGCGT GGAGGCGTCC ACCAACGGTG GCCTCGCCGT CCCGACGACC 
TCGGGCCTGG AGGAGATCTT CGAGGAGATC TCCCCGATCG AGGACTTCTC CGGCTCGATG 
TCGCTGTCGT TCCGCGACCA CCGGTTCGAG CCGCCGAAGT ACTCCCTCGA CGACTGCAAG 
GAGCGCGACC TCACCTACTC CGCGCCGCTC TTCGTCACCG CGGAGTTCAT CAACGGCAAC 
ACCGGTGAGA TCAAGTCCCA GACGGTCTTC ATGGGCGACT TCCCGCTCAT GACCGACCGC 
GGCACCTTCG TCATCAACGG CACCGAGCGC GTCGTCGTGT CGCAGCTGGT CCGTTCCCCG 
GGCATCTACT TCGAGCGCGT GCCGGACAAG ACCTCCGACC GCGACACCTG GACCGCGAAG 
ATCATCCCCT CGCGCGGTGC CTGGCTGGAG TTCGAGATCG ACAAGCGCGA CACCGTCGGC 
GTCCGCGTCG ACCGCAAGCG CAAGCAGTCG GTCACGGTCC TCATGAAGGC CCTGGGCTGG 
AGCGAGTCGC AGATCCGCGA GGAGTTCGCC GACTACGAGT CGATGATCTC CACGCTGGAG 
AAGGACCACA CCTCCGGCGT CGAGGACGCG CTGCTGGACA TCTACCGCAA GCTGCGCCCG 
GGCGAACCGC CGACGCAGGA GGCCGCGCGC AACCTCCTCG ACAACCTCTA CTTCAACCCC 
AAGCGCTACG ACCTCGCCAA GGTCGGCCGC TACAAGGTGA ACAAGAAGCT GGGGACCGAG 
GAGCCGCTGA GCGACAGCGT CCTCTCCGTC GACGACATCG TGCGCACCAT CAAGTACCTG 
GTGAAGCTGC ACGCCGGCGA GGTCACCATG CCGGGCGTCA AGAACGGCCA GCCCGTCGAC 
GTGCGCGTCG AGGTCGACGA CATCGACCAC TTCGGCAACC GCCGCCTGCG CAGCGTGGGC 
GAGCTCATCC AGAACCAGGT CCGCACCGGC CTGTCCCGGA TGGAGCGCGT CGTGCGCGAG 
CGCATGACGA CGCAGGACGT CGAGGCCATC ACGCCGCAGA CGCTCATCAA CATCCGTCCC 
GTCGTGGCCT CCATCAAGGA GTTCTTCGGG ACCAGCCAGC TCTCGCAGTT CATGGACCAG 
ACCAACCCCC TCGCGGGTCT GACCCACAAG CGCCGCCTGT CGGCGCTGGG TCCGGGCGGT 
CTGTCCCGTG AGCGGGCCGG CATGGAGGTC CGCGACGTCC ACCCGTCGCA CTACGGCCGC 
ATGTGCCCCA TCGAGACGCC GGAAGGCCCG AACATCGGCC TCATCGGGTC GCTGTCGTCC 
TACGGGCGCA TCAACCCGTT CGGCTTCATC GAGACCCCCT ACCGCAAGAT CGTGGACGGG 
GTCGTCTCCG ACGAGGTCGA GTACCTGACC GCCGACGAGG AGGACGCCTT CGTCATCGCG 
CAGGCCAACG CCCCCCTCGA CGCGGACAGC CGCTTCGCCG AGGCCCGCGT CCTCGTGCGC 
GCCAAGGGCG GCGAGACGGA GTTCGTCCCG CGCGACGAGG TCGACTACAT GGACGTCGCC 
GCGCGCCAGA TGGTCTCGGT CGCGACCGCG ATGATCCCGT TCCTCGAGCA CGACGACGCC 
AACCGCGCGC TCATGGGCGC CAACATGCAG CGCCAGGCCG TGCCGCTGGT GAAGTCCGAG 
GCGCCGCTCA TCGGCACCGG CATGGAGTTC CGCGCCGCGG TCGACGCCGG CGACGTCGTG 
GTGGCCACCA AGGCCGGCGT GGCGACGGAC GTGTCCGCCG ACATGATCAC CACCAGCAAC 
GACGACGGCA CCTCCACGAC CTACAAGGTC GCGAAGTTCC GCCGCTCCAA CCACGGCACC 
GCCTACAACC AGCAGGTCGT CATCAACGAG GGCGACCGCG TCGAGGTCGG GACGGTGCTG 
GCCGACGGCC CCTCCACCGA CGGCGGCGAG ATGGCGCTGG GACGCAACCT GATGGTCGCG 
TTCATGCCGT GGGAGGGTCA CAACTACGAG GACGCGATCA TCCTGTCGCA GCGCCTCGTG 
CAGGACGACG TCCTCTCCTC GATCCACATC GAGGAGCACG AGGTCGACGC CCGCGACACC 
AAGCTCGGGC CCGAGGAGAT CACCCGGGAC ATCCCGAACG TGGCCGAGGA GGTGCTGGCC 
GACCTCGACG AGCGCGGGAT CATCCGCATC GGCGCCGAGG TCCGCGACGG CGACCTGCTC 
GTCGGCAAGG TCACGCCCAA GGGCGAGACC GAGCTGACCC CGGAGGAGCG CCTGCTGCGC 
GCGATCTTCG GCGAGAAGGC CCGCGAGGTC CGCGACACCT CCCTCAAGGT GCCCCACGGC 
GAGACGGGCA CCGTCATCGG CGTCAAGGTC TTCGACCGCG ACGAGGGCGA CGAGCTGCCC 
CCGGGCGTGA ACCAGCTGGT GCGCGTCTAC GTGGCCAACA AGCGCAAGAT CACCGACGGG 
GACAAGCTCG CCGGGCGCCA CGGCAACAAG GGCGTCATCT CCAAGATCCT GCCCGTGGAG 
GACATGCCGT TCCTCGAGGA CGGCACGCCG GTCGACGTGA TCCTCAACCC GCTCGGCGTC 
CCGAGCCGGA TGAACGTCGG TCAGGTCCTG GAGCTGCACC TCGGCTGGAT CGCCAGCCGC 
GGCTGGAAGA TCGAGGGTCA GCCGGACTGG GCGAAGCTCA TCCCGGAGGA GATCCGCGAG 
GCGCCGGCCG GCTCCCGCAT CGCGACGCCC GTCTTCGACG GTGCCCGCGA GGAGGAGATC 
ACCGGTCTGC TCAGCTCGAC GATCCCGACC CGCGACGGGG ACCGCCTCGT CGGCGGCGAC 
GGCAAGGCGC GGCTGTTCGA CGGCCGCTCC GGCGAGCCGT TCCCGGACCC GGTGGCGGTC 
GGCTACATGT ACATCCTGAA GCTGCACCAC CTGGTCGACG ACAAGATCCA CGCCCGGTCG 
ACGGGCCCGT ACTCGATGAT CACCCAGCAG CCGCTGGGTG GTAAGGCGCA GTTCGGTGGA 
CAGCGCTTCG GCGAGATGGA GGTCTGGGCC CTGGAGGCCT ACGGCGCCGC CTACGCCCTG 
CAGGAGCTGC TGACGATCAA GTCCGACGAC GTGCTGGGCC GCGTGAAGGT CTACGAGGCC 
ATCGTCAAGG GCGAGAACAT CCCCGAGCCG GGCATCCCCG AGAGCTTCAA GGTGCTCATC 
AAGGAGATGC AGTCGCTGTG CCTGAACGTG GAGGTCCTCT CCTCCGACGG CATGGCCATC 
GAGATGCGGG ACAGCGACGA GGACGTCTTC CGGGCGGCCG AGGAACTGGG CATCGACCTG 
GCCCGGCGCG AGCCGAGCAG CGTCGAAGAG GTCTGA 

 

Protein sequence

MEGPLLAASL PASAPNSTYI GNQSPRTVSG RYSFGKIHEP LEVPDLLALQ TDSFDWLLGN 
KRWQDRVEAS TNGGLAVPTT SGLEEIFEEI SPIEDFSGSM SLSFRDHRFE PPKYSLDDCK 
ERDLTYSAPL FVTAEFINGN TGEIKSQTVF MGDFPLMTDR GTFVINGTER VVVSQLVRSP 
GIYFERVPDK TSDRDTWTAK IIPSRGAWLE FEIDKRDTVG VRVDRKRKQS VTVLMKALGW 
SESQIREEFA DYESMISTLE KDHTSGVEDA LLDIYRKLRP GEPPTQEAAR NLLDNLYFNP 
KRYDLAKVGR YKVNKKLGTE EPLSDSVLSV DDIVRTIKYL VKLHAGEVTM PGVKNGQPVD 
VRVEVDDIDH FGNRRLRSVG ELIQNQVRTG LSRMERVVRE RMTTQDVEAI TPQTLINIRP 
VVASIKEFFG TSQLSQFMDQ TNPLAGLTHK RRLSALGPGG LSRERAGMEV RDVHPSHYGR 
MCPIETPEGP NIGLIGSLSS YGRINPFGFI ETPYRKIVDG VVSDEVEYLT ADEEDAFVIA 
QANAPLDADS RFAEARVLVR AKGGETEFVP RDEVDYMDVA ARQMVSVATA MIPFLEHDDA 
NRALMGANMQ RQAVPLVKSE APLIGTGMEF RAAVDAGDVV VATKAGVATD VSADMITTSN 
DDGTSTTYKV AKFRRSNHGT AYNQQVVINE GDRVEVGTVL ADGPSTDGGE MALGRNLMVA 
FMPWEGHNYE DAIILSQRLV QDDVLSSIHI EEHEVDARDT KLGPEEITRD IPNVAEEVLA 
DLDERGIIRI GAEVRDGDLL VGKVTPKGET ELTPEERLLR AIFGEKAREV RDTSLKVPHG 
ETGTVIGVKV FDRDEGDELP PGVNQLVRVY VANKRKITDG DKLAGRHGNK GVISKILPVE 
DMPFLEDGTP VDVILNPLGV PSRMNVGQVL ELHLGWIASR GWKIEGQPDW AKLIPEEIRE 
APAGSRIATP VFDGAREEEI TGLLSSTIPT RDGDRLVGGD GKARLFDGRS GEPFPDPVAV 
GYMYILKLHH LVDDKIHARS TGPYSMITQQ PLGGKAQFGG QRFGEMEVWA LEAYGAAYAL 
QELLTIKSDD VLGRVKVYEA IVKGENIPEP GIPESFKVLI KEMQSLCLNV EVLSSDGMAI 
EMRDSDEDVF RAAEELGIDL ARREPSSVEE V