| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Krad_0638 |
|---|
| Symbol | |
|---|
| ID | 5336678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Kineococcus radiotolerans SRS30216 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009664 |
|---|
| Strand | - |
|---|
| Start bp | 1642172 |
|---|
| End bp | 1644574 |
|---|
| Gene Length | 2403 bp |
|---|
| Protein Length | 800 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001360391 |
|---|
| Protein GI | 152964607 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.290877 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000110777 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | GTGCGCGAAC GTCGCCCCCG GGCCAGCGTC CTCTTCGACG GCGCCGTCAC CCTGGCGGCC
GTCGTGACGA CCGTGCTCGC CGCCCTGGCC TTCGGCCGGG ACGCCGGCGC CGGGCAGTGG
CACGACCTCG CCCTCTGCGT CGTCGTCGGC CTGCCCCTCA TGCAGCTGCT GACCCGCTTC
CCGTTCCAGA TCAACACCCG CCACGCCGGC GTCGAGGTCC AGTTCGACGT CGGGGTCCTG
ATCTTCCTGC TCTGCTTCGC CGCCCCGGCC ACCGCCGCCC TCGCCTGGTG CCTGTGCGTC
GTCCCGACCG GGCTGCTGCA GCGCCGCAGC TGGGTGAGCC GGGTCTACAA CGCGAGCATC
GGCGTGCTCT TCATGCCCGT CGCGCTGGCC GTGCTGGAAC TGTTCGGCAC CACCGGGCGG
GCCCCCGAGG AGAGCCGGTA CCGCGGGCTC GAACGGATCA TCCGGGTCGA CATGACCGTC
CCCGAGCTGC TCGCCGTCTC CGCCGCGGTC ATCGCCGTCT TCGTCGTCGA CGTGGCCGTC
TCCGCGGTCT CCGTCGCGAT CCAGGAACGC ACCTCCGTCA AGGGCGAGCT CCTGCACACC
GGGGCCTGGC TCGCCGTCGG CGCCAGCGTC GCCGTCGGCG GCCTCGGCTA CCTCGGCGGG
CTCGTGGAGT CCCGGCTGGA CCGCTGGGCC GCGCTGCTGC TGGTGATCCC GATGGTCGTG
ACGATGATGG CCACCCGCGC CATGCGCACC ACCCGCGACG TCGCCCGCCG CAGCGAGGCC
CTCTTCGAGG CCGCCACCGC CCTGCACACC CAGGGCCGCC GCGCCGACCT CGCCCGGGCC
CTGCAGAAGC ACGCCCGCAT GGTCGCCGGC ACCCCGGCCG CGATGGTCCG CTCCGTGGGA
CCCGCCGAGG ACGAGATCGG GGTGCCCGTC GTCGCCGGCG ACGGCGTCGT GCTCTACATC
ACCGCCCCCC GCCGCCGCGA CCCCGCCCAG CGCGCCTCCG ACGAGAAGGC CCTCGAGGCG
CTCGCCTCGG TCGGGGAGGC CGCGTTCTTC CGGGTCAGCG CCAGCGAGGA GATGCACGGC
CTGGCCCGCC GCGACGTCGT CACGGGGCTG CCCAACCGCC TGCAGTTCGC CGAGCGCCTC
GCCCAGGAGC TGGACCGCGC GCGCGAGGCC TCCCGCCTGG ACCGGCTCGT CGTCCTCTAC
CTCGACCTCG ACGGGTTCAA GTCCGTCAAC GACCGCTTCG GCCACGAGGC CGGCGACGAG
CTCCTGCGGC TGGTCGGCTC CCGCCTGCGC GACACCCTGC GCGGGGGCAG CACCGTGGCC
CGCCTGGGCG GCGACGAGTT TGCCGTCCTG CTGCCGGACT GCCAGGACGT CGAGGGCCTC
TGCCGCCGCG TGCTCGTCGC GCTGCGCGTG GAGGTCAGGA TGCGCGGGCA CGTCCTGCGG
GTGCAGGGCA GCATCGGGCT CTCCCGGGCC CGGCCCGGCG ACGACGTCGG GACCCTGCTG
CGCAACGCCG ACACCGCCAT GTACCGGGCC AAGGCCACCG GCAAGAACCG GTGGGTGGAG
TTCCGCCCCG AGCTGCTGGA GGAGGAGATC GCCCGCCTGC AGGTCATCGA GGACCTCCAG
CAGGCCCCCG CCGAGGCCTT CGTCGTGCAC TACCAGCCCA TCGTCGACCT GCAGGCCGGC
CCCGACCAGG ACCCCGCGGC CCGCATCGTC GGCCTCGAGG CGCTGGTGCG CTGGCGCCGC
GACCGCGGCG GCGGCGTCGA ACCCCTCGTC GGTCCCGACG AGTTCATCGG CCTGGCCGAG
CGCTCGGGCA CCGTCGTCGC CATCGGGGAC TCGGTGCTGC GCCAGGTCGC CCGCGACGCC
GCGTCCATCC AGCAGCACGC CGCGCGCCGC CTGGACCTCA TGGTCAACGT CTCGCCCGTG
CAGCTGCGCC ACCCCGACTT CACCGAGCGG GTGGCCGCCG CGGTGCGCCA GACCACCTCC
AGCGGCTGCC GCCTGCACCT GGAGATGACC GAGAGCGTCA TGATCGACGA CGACACCGTC
GGCCGGTTGC GCGACCTCGC CGAGACCGGC GCGCAGCTGA CCATCGACGA CTTCGGCACC
GGGTTCTCCT CCCTGGGCTA CCTGCGGCAC CGCCCGTTCT CCTCGTTCAA GATCGACCGC
AGCTTCGTGC GCGACATCGC CACCGAGCCC ACGGCTCGCG CGCTGGTCGA AGGCATGGTG
AAGATGGGGC AGGCCCTCGG GCTGACGATC GTCGCCGAAG GGGTGGAGCA CCCCGAGCAG
GCGGAGATCC TGCGCGACAT GGGGTGCCAC CTGGCCCAGG GGCACCTGTA CTGCCGGCCG
CTGGCCCTGG AGGACATCCA GGGCGTCCTC TCCGGCCCGG TGGCCCGTCC GCTCAGCGCG
TGA
|
|---|
| Protein sequence | MRERRPRASV LFDGAVTLAA VVTTVLAALA FGRDAGAGQW HDLALCVVVG LPLMQLLTRF
PFQINTRHAG VEVQFDVGVL IFLLCFAAPA TAALAWCLCV VPTGLLQRRS WVSRVYNASI
GVLFMPVALA VLELFGTTGR APEESRYRGL ERIIRVDMTV PELLAVSAAV IAVFVVDVAV
SAVSVAIQER TSVKGELLHT GAWLAVGASV AVGGLGYLGG LVESRLDRWA ALLLVIPMVV
TMMATRAMRT TRDVARRSEA LFEAATALHT QGRRADLARA LQKHARMVAG TPAAMVRSVG
PAEDEIGVPV VAGDGVVLYI TAPRRRDPAQ RASDEKALEA LASVGEAAFF RVSASEEMHG
LARRDVVTGL PNRLQFAERL AQELDRAREA SRLDRLVVLY LDLDGFKSVN DRFGHEAGDE
LLRLVGSRLR DTLRGGSTVA RLGGDEFAVL LPDCQDVEGL CRRVLVALRV EVRMRGHVLR
VQGSIGLSRA RPGDDVGTLL RNADTAMYRA KATGKNRWVE FRPELLEEEI ARLQVIEDLQ
QAPAEAFVVH YQPIVDLQAG PDQDPAARIV GLEALVRWRR DRGGGVEPLV GPDEFIGLAE
RSGTVVAIGD SVLRQVARDA ASIQQHAARR LDLMVNVSPV QLRHPDFTER VAAAVRQTTS
SGCRLHLEMT ESVMIDDDTV GRLRDLAETG AQLTIDDFGT GFSSLGYLRH RPFSSFKIDR
SFVRDIATEP TARALVEGMV KMGQALGLTI VAEGVEHPEQ AEILRDMGCH LAQGHLYCRP
LALEDIQGVL SGPVARPLSA
|
|---|
| |