| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_6369 |
|---|
| Symbol | |
|---|
| ID | 5356933 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | - |
|---|
| Start bp | 6585762 |
|---|
| End bp | 6587498 |
|---|
| Gene Length | 1737 bp |
|---|
| Protein Length | 578 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640815413 |
|---|
| Product | putative inner membrane protein translocase component YidC |
|---|
| Protein accession | YP_001351680 |
|---|
| Protein GI | 152983547 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0706] Preprotein translocase subunit YidC |
|---|
| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACATTC AACGCTCGAT TCTCATCGTC GCCCTTGCAG TCGTGTCCTA CCTGCTGGTC
CTCCAGTGGA ACAAGGACTA TGGTCAGCCT GAGCTGCCCG CCGCCAGCGC TTCGATGAAC
ACCACGCAAG GCCTGCCGGA CACTCCGTCC GCCGCCGGTA CCAGCAGTGA CGTGCCCACC
GCCCAGAGCG GCGCTGCCGG CAGCGAAGCC GCCGACAAAC CGGTTGCGGT CAGCGACAAG
CTGATCCAGG TGAAGACCGA CGTCCTCGAC CTGGCCATCG ACCCCCGCGG CGGCGACATC
GTCCAGCTCG GCCTGCTCCA GTATCCGCGC CGGCTCGATC GACCGGACGT GCCGTTCCCG
CTGTTCGACA ACGGGCGCGA GCGCACCTAC CTGGCGCAGA GCGGCCTGAC CGGCGCCGAC
GGCCCGGACG CCAGCAGCGC CGGACGCCCG CTGTTCCACA GCGCGCAGGG CAGCTACCAG
TTGGCCGACG GCCAGAACGA GCTGGTGGTC GACCTCAGCT TCAGCCGCGA CGGCGTCAAC
TACATCAAGC GCTTCACCTT CCATCGTGGC CTGAAAGCCG ATTGCTCGGA CAAGGAAAAG
GCCCAGAAGA AGATCGAGTG CATCAATGAA AACGCCTATC AGGTCGGCGT CAGCTACCTG
ATCGACAACC AGAGCGGCAA GACCTGGAGC GGCAACCTGT TCGCCCAGCT CAAGCGCGAT
GGCAGTGCGG ATCCTTCCTC GACCACCGCC ACCGGGGTGT CCACCTACCT CGGCGCCGCT
GTCTGGACCC CGGATTCGCC GTACAAGAAG ATCTCCACCA AGGACATGGA CAAGGAGCAG
TTCAAGGAGT CCGTCCAGGG TGGCTGGGTC GCCTGGCTGC AACATTACTT CGTCACCGCC
TGGGTCCCGA CCAAGGGCGA ACAGCACCAG GTCATGACCC GCAAGGATGG CCAGGGCAAC
TACATCGTCG GCTTCACCGG CCCGACCCTC AGCGTGCCGG CGGGCGGCAA GGTGGAAACC
GACCTGACCC TGTATGCCGG TCCGAAACTC CAGAAGCACC TGAAAGAGCT TTCTCCAGGC
CTGGAACTGA CCGTCGACTA CGGTTTCCTG TGGTTCATCG CCCAGCCGAT CTTCTGGCTG
CTGCAACATA TCCACAGCCT GATCGGCAAC TGGGGCTGGT CGATCATCGC CCTCACCGTG
CTGATCAAAC TGGCCTTCTT CCCGCTGTCC GCCGCCAGCT ACCGTTCGAT GGCGCGCATG
CGCGCGGTGT CGCCGAAGAT GCAGGCAATC AAGGAACAGC ATGGCGACGA TCGGCAGAAG
ATGTCCCAGG CGATGATGGA GCTGTACAAG AAGGAGAAGA TCAATCCGCT GGGCGGCTGC
CTGCCGATCC TGGTGCAGAT GCCGGTCTTC CTCTCGCTCT ACTGGGTGCT CCTGGAAAGC
GTGGAAATGC GTCAGGCCCC GTGGCTCGGC TGGATCACCG ACCTGTCGGT GAAGGATCCG
TTCTTCATCC TGCCGATCGT CATGGGCGGC ACCATGCTCA TCCAGCAGAT GCTCAACCCG
ACCCCGCCGG ACCCAATGCA GGCCAAGGTG ATGAAGCTGA TGCCGATCAT CTTCACCTTC
TTCTTCCTCT GGTTCCCTGC CGGTCTGGTG CTGTACTGGG TAGTCAACAA CGTCTTGTCG
ATCGCCCAGC AGTGGTACAT TACCCGCAAG ATCGAGGCAG CCGCGAAGAC CGCCTGA
|
|---|
| Protein sequence | MDIQRSILIV ALAVVSYLLV LQWNKDYGQP ELPAASASMN TTQGLPDTPS AAGTSSDVPT
AQSGAAGSEA ADKPVAVSDK LIQVKTDVLD LAIDPRGGDI VQLGLLQYPR RLDRPDVPFP
LFDNGRERTY LAQSGLTGAD GPDASSAGRP LFHSAQGSYQ LADGQNELVV DLSFSRDGVN
YIKRFTFHRG LKADCSDKEK AQKKIECINE NAYQVGVSYL IDNQSGKTWS GNLFAQLKRD
GSADPSSTTA TGVSTYLGAA VWTPDSPYKK ISTKDMDKEQ FKESVQGGWV AWLQHYFVTA
WVPTKGEQHQ VMTRKDGQGN YIVGFTGPTL SVPAGGKVET DLTLYAGPKL QKHLKELSPG
LELTVDYGFL WFIAQPIFWL LQHIHSLIGN WGWSIIALTV LIKLAFFPLS AASYRSMARM
RAVSPKMQAI KEQHGDDRQK MSQAMMELYK KEKINPLGGC LPILVQMPVF LSLYWVLLES
VEMRQAPWLG WITDLSVKDP FFILPIVMGG TMLIQQMLNP TPPDPMQAKV MKLMPIIFTF
FFLWFPAGLV LYWVVNNVLS IAQQWYITRK IEAAAKTA
|
|---|
| |