| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_5239 |
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| Symbol | mexD |
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| ID | 5358108 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa PA7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009656 |
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| Strand | - |
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| Start bp | 5388990 |
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| End bp | 5392121 |
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| Gene Length | 3132 bp |
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| Protein Length | 1043 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640814285 |
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| Product | RND multidrug efflux transporter MexD |
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| Protein accession | YP_001350571 |
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| Protein GI | 152987450 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGAAT TCTTCATCAA GCGGCCGAAC TTCGCCTGGG TGGTGGCGCT GTTCATCTCC
CTGGCCGGCC TGCTGGTCAT TTCCAGATTG CCGGTGGCGC AGTACCCCAG TGTCGCGCCA
CCGCAGATCA CCATTACCGC CACCTACCCC GGCGCTTCGG CGAAGGTACT GGTGGATTCC
GTCACCAGCG TTCTCGAGGA GTCGCTGAAC GGCGCGAAGG GCCTGCTCTA CTTCGAGTCG
ACCAACAATT CCAACGGTAC CGCCGAGATC GTCGTCACCT TCGAGCCCGG CACCGATCCG
GACCTGGCCC AGGTCGATGT GCAGAACCGC CTGAAGAAAG CCGAGGCGCG CATGCCGCAG
GCGGTGCTGA CCCAGGGGGT GGAGGTCGAG CAGACCAGCG CCGGCTTCCT GTTGATCTAC
GCCCTCAACT ACAAGGAAGG CGTGCAGCGC AGCGACACCA CCGCCCTGGG CGACTATGCC
GCGCGCAACA TCAACAACGA ACTGCGTCGC CTGCCGGGTG TCGGCAAGCT GCAGTTCTTC
TCCTCCGAGG CGGCCATGCG GGTCTGGATC GATCCGCAGA AGCTGGTCGG CTTCGGACTC
TCCATCGACG ACGTGAGCAA CGCCATTCGC GGACAGAACG TGCAGGTCCC CGCCGGCGCC
TTCGGCAGCG CGCCGGGCAG TTCCGAGCAG GAGCTGAGCG CCACGCTGGC GGTGAAGGGC
ACCCTGGACA ACCCGCAGGA GTTCGGCCAG GTGGTCCTGC GCGCCAACGA GGACGGATCC
CTGGTCAGGC TCGCCGACGT CGCGCGCCTG GAGCTCGGCA AGGAGAGCTA CAACATTTCC
TCGCGGCTGA ACGGCACGCC TACCGTGGGC GGGGCGATCC AGCTGTCGCC CGGGGCCAAC
GCGATCCAGA CCGCCACACT GGTGAAGCAG CGCCTCGCCG AATTGTCGGC GTTCTTCCCC
GAGGACATGC AGTACAGCGT GCCCTACGAC ACCTCGCGCT TCGTCGACGT GGCCATCGAG
AAGGTGATCC ACACCCTGAT CGAGGCGATG GTGCTGGTGT TCCTGGTGAT GTTCCTGTTC
CTGCAGAACG TCCGCTACAC CCTGATCCCG TCGATCGTGG TGCCGGTGTG TCTGCTCGGC
ACGCTGATGG TCATGTACCT GCTGGGCTTC TCGGTGAACA TGATGACCAT GTTCGGCATG
GTGCTGGCGA TCGGCATCCT GGTGGACGAT GCCATCGTGG TGGTGGAGAA CGTCGAGCGG
ATCATGGCGG AGGAGGGGCT GTCGCCGGCC GAGGCCACCG CCAAGGCGAT GAGGCAGGTC
TCCGGTGCGA TCGTCGGCAT CACCCTGGTG CTTTCGGCGG TGTTCCTGCC GCTGGCCTTC
ATGGCCGGCT CGGTGGGGGT GATCTACCAG CAGTTCTCGG TATCGCTGGC GGTCTCGATC
CTGTTCTCCG GCTTCCTCGC CCTGACCTTC ACCCCGGCGC TGTGCGCCAC CCTGCTCAAG
CCCATCCCCG AGGGGCATCA CGAGAAGCGC GGCTTCTTCG GCGCCTTCAA CCGCGGCTTC
GCCCGCCTCA CCGGCCACTA TTCCCTGCTC AACTCGAAGC TGGTGGCGCG CGCCGGGCGC
TTCATGCTGG TGTACGCCGG CCTGGTGGCG GCGCTCGGCT ACTTCTACCT GCGCCTGCCG
GAGGCCTTCG TGCCGGCTGA AGACCTCGGC TACATGGTGG TCGACGTGCA GTTGCCGCCC
GGTGCCTCGC GCATGCGCAC CGACGCCACC GGCGAGGAAC TGGAACGCTT CCTCGAGACC
CGCGAGGCGG TGGACTCGGT ATTCCTGGTC TCCGGCTTCA GCTTCTCCGG ACAGGGCGAC
AACGCCGCGC TGGCCTTCCC GACCTTCAAG GACTGGTCCG AGCGCGGCCC GGGGCAATCG
GCCGCCGCCG AGATCGCCGC GGTGAACGAG CATTTCGCGT TGCCCGACGA CGGCACCATC
ATGGCCGTTT CGCCGCCGCC GATCGACGGC CTGGGCAACT CCGGCGGCTT CGCCCTGCGC
CTGATGGACC GTGGCGGCGT CGGCCGCGAA GCCCTGCTGC AGGCCCGCGA TACCCTGCTC
GGCGAGGTCC GGGGCAATCC GAAATTCCTC TACGCGATGA TGGAAGGCCT GGCCGAGGCG
CCGCAGCTGC GCCTGCTGAT CGACCGCGAG AAGGCCCGGG CCCTGGGGGT GGGCTTCGAG
AGCATCAGCG GCACGCTGTC CGCCGCGTTC GGTTCGGACG TGATCAACGA CTTCACCAAC
GCCGGGCGCC AGCAGCGCGT GGTGATCCAG GCCGAGCAGG GCGCCCGGAT GACCCCGGAA
AGCGTGCTCA GGCTCTACGT GCCCAACGCC CGCGGCGAGC TGGTGCCGCT AAGCGCCTTC
GTCAGCATGA AATGGGAAGA GGGACCGGTA CAGCTGGTGC GCTACAACGG CTACCCGTCG
ATCCGCATCG TCGGCGACGC CGCGCCCGGC TTCAGCACCG GCGAGGCCAT GGCGGAAATG
GAGCGCCTGG CCGCGCAGCT GCCGGCCGGC ATCGGTTACG AATGGACCGG CCTGTCCTAC
CAGGAGAAGG TCTCCGCCGG CCAGGCGACC GCCCTGTTCG CCCTGGCCAT CCTGGTGGTG
TTCCTGCTGC TGGTGGCGCT CTACGAGAGC TGGTCGATTC CGTTGTCGGT CATGCTGATC
GTGCCGATCG GCGCCATCGG CGCGGTGCTG GCGGTGATGG TCACGGGCAT GGCCAACGAC
GTCTACTTCA AGGTCGGCCT GATCACCATC ATCGGCCTGT CGGCGAAGAA CGCGATCCTC
ATCGTCGAGT TCGCCAAGGA GCTCTGGGAA AAGGGACATG GCCTGCGCGA CGCCGCCATC
GAGGCTGCGC GCCTGCGCTT CCGGCCGATC ATCATGACCT CCATGGCCTT CATCCTCGGC
GTGGTGCCCC TGGCCCTGGC CAGCGGCGCC GGCGCGGCCA GCCAGCGCGC CATCGGCACC
GGGGTGATCG GCGGGATGCT CAGCGCGACC TTCCTCGGCG TGCTGTTCGT GCCCATCTGC
TTCGTCTGGC TGCTGTCGCT GCTGCGCAGC AAGCCGGCGC CCATCGAACC GGCCGCCACG
GCCCGGGAGT GA
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| Protein sequence | MSEFFIKRPN FAWVVALFIS LAGLLVISRL PVAQYPSVAP PQITITATYP GASAKVLVDS
VTSVLEESLN GAKGLLYFES TNNSNGTAEI VVTFEPGTDP DLAQVDVQNR LKKAEARMPQ
AVLTQGVEVE QTSAGFLLIY ALNYKEGVQR SDTTALGDYA ARNINNELRR LPGVGKLQFF
SSEAAMRVWI DPQKLVGFGL SIDDVSNAIR GQNVQVPAGA FGSAPGSSEQ ELSATLAVKG
TLDNPQEFGQ VVLRANEDGS LVRLADVARL ELGKESYNIS SRLNGTPTVG GAIQLSPGAN
AIQTATLVKQ RLAELSAFFP EDMQYSVPYD TSRFVDVAIE KVIHTLIEAM VLVFLVMFLF
LQNVRYTLIP SIVVPVCLLG TLMVMYLLGF SVNMMTMFGM VLAIGILVDD AIVVVENVER
IMAEEGLSPA EATAKAMRQV SGAIVGITLV LSAVFLPLAF MAGSVGVIYQ QFSVSLAVSI
LFSGFLALTF TPALCATLLK PIPEGHHEKR GFFGAFNRGF ARLTGHYSLL NSKLVARAGR
FMLVYAGLVA ALGYFYLRLP EAFVPAEDLG YMVVDVQLPP GASRMRTDAT GEELERFLET
REAVDSVFLV SGFSFSGQGD NAALAFPTFK DWSERGPGQS AAAEIAAVNE HFALPDDGTI
MAVSPPPIDG LGNSGGFALR LMDRGGVGRE ALLQARDTLL GEVRGNPKFL YAMMEGLAEA
PQLRLLIDRE KARALGVGFE SISGTLSAAF GSDVINDFTN AGRQQRVVIQ AEQGARMTPE
SVLRLYVPNA RGELVPLSAF VSMKWEEGPV QLVRYNGYPS IRIVGDAAPG FSTGEAMAEM
ERLAAQLPAG IGYEWTGLSY QEKVSAGQAT ALFALAILVV FLLLVALYES WSIPLSVMLI
VPIGAIGAVL AVMVTGMAND VYFKVGLITI IGLSAKNAIL IVEFAKELWE KGHGLRDAAI
EAARLRFRPI IMTSMAFILG VVPLALASGA GAASQRAIGT GVIGGMLSAT FLGVLFVPIC
FVWLLSLLRS KPAPIEPAAT ARE
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