Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPA7_4824 |
Symbol | gspE1 |
ID | 5356081 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa PA7 |
Kingdom | Bacteria |
Replicon accession | NC_009656 |
Strand | - |
Start bp | 4964410 |
End bp | 4965819 |
Gene Length | 1410 bp |
Protein Length | 469 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640813870 |
Product | putative type II secretion system protein |
Protein accession | YP_001350165 |
Protein GI | 152986413 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0112939 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAGCCTGC TGCCCTACGC CTGGGCCAAG GCGCAGCGCG CCCTGCTGCG GCCGGGCGCC GACGGCGCGA CCCTGCTGGT CAGTCCGCGC ACGCCCGGCT GGGCGATCAG CGAGGTGCGC CAGCGGCATG CCGTGGCCAG TCTCGAGAGC GTCCGCGATG ACGAACTCGA CACCCTGCTG GCCAGCGCCT ATTCCGACAC CGGCAGCGCC GCGGCGGTGG TCGGCGCGGC GGAGAGCGAG GTCGACCTCG ACCGCCTGCT GGACGACATC CCCGAGGTCA CCGACCTGCT CGACACCCAG GACGGCGCGC CGGTGATCCG CATGATCAAC GCGCTGCTGA CCCAGGCCGC GCGCGACGAG GCCAGCGACA TCCACATCGA GCCCTTCGAG ACCCATTCGG TGGTGCGCTA CCGCGTCGAC GGCGCCCTGC GCGACGTGGT CGCGCCGCGC AAGGCGCTGC ACGCGGCGCT GGTATCGCGG ATCAAGATCA TGGCGCAGCT GGACATCGCC GAGAAACGCC TGCCCCAGGA CGGCCGCATC GCCCTGCGGG TGGCCGGGCG ACCGATCGAC ATCCGCGTCT CCACCGTACC CACCGGGCAC GGCGAGCGGG TGGTGATGCG TCTGCTGGAC AAGCAGGCCG GGCGCCTGAA GCTGGAGACC CTGGGCATGG CCCCGGGGGT GCTGGCGCCG CTGGACCAGC TGATCCGCCA GCCGCACGGC ATCGTGCTGG TCACCGGGCC CACCGGCAGC GGCAAGACCA CCACCCTCTA CGCCGCCCTG GCGCGGCTCG ACGCCAGCAC CAGCAACATC CTCACCGTCG AGGACCCGGT GGAGTACGAC CTGCCCGGGA TCAGCCAGAT CCAGGTCAAC GCGCGCATCG ACATGACCTT CGCCGTGGCC CTGCGGGCGA TCCTCCGGCA GGACCCGGAC ATCATCATGA TCGGCGAGAT CCGCGACCTG GAGACCGCGC AGATCGCCGT GCAGGCCTCG CTCACCGGGC ACCTGGTGCT GGCCACGCTG CACACCAACG ACGCGGTGTC GGCGGTGACC CGGCTGGTGG ACATGGGCGT CGAGCCATTC CTGCTCGCCT CGTCGATGCT CGGCGTGCTC GCCCAGCGCC TGGTGCGGCG CCTGTGCACG CACTGCCGGG TCGAAGAGGA CGGCGGTTGG CGCGCGGTCG GCTGCCCGGC CTGCAACCAC ACCGGCTACA GCGGGCGCAC CGGCATCCAC GAGCTGTTCG TGATCGACGA CGAGATCCGT CGCCTGGTCC ACCAGGGCCG CGCCGAGCAG GATCTCCGCG AAGCCGCCCG CGCCGCCGGC ATGCGCAGCA TGCGCGAGGA CGGCGAGCGC TGGATCGCCA GCGGCGCCAC CACCCTGGAG GAAATCCTCC GCGTGACCCG GGACGCCTGA
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Protein sequence | MSLLPYAWAK AQRALLRPGA DGATLLVSPR TPGWAISEVR QRHAVASLES VRDDELDTLL ASAYSDTGSA AAVVGAAESE VDLDRLLDDI PEVTDLLDTQ DGAPVIRMIN ALLTQAARDE ASDIHIEPFE THSVVRYRVD GALRDVVAPR KALHAALVSR IKIMAQLDIA EKRLPQDGRI ALRVAGRPID IRVSTVPTGH GERVVMRLLD KQAGRLKLET LGMAPGVLAP LDQLIRQPHG IVLVTGPTGS GKTTTLYAAL ARLDASTSNI LTVEDPVEYD LPGISQIQVN ARIDMTFAVA LRAILRQDPD IIMIGEIRDL ETAQIAVQAS LTGHLVLATL HTNDAVSAVT RLVDMGVEPF LLASSMLGVL AQRLVRRLCT HCRVEEDGGW RAVGCPACNH TGYSGRTGIH ELFVIDDEIR RLVHQGRAEQ DLREAARAAG MRSMREDGER WIASGATTLE EILRVTRDA
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