Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPA7_4823 |
Symbol | gspF1 |
ID | 5355236 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa PA7 |
Kingdom | Bacteria |
Replicon accession | NC_009656 |
Strand | - |
Start bp | 4963196 |
End bp | 4964410 |
Gene Length | 1215 bp |
Protein Length | 404 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640813869 |
Product | putative type II secretion system protein |
Protein accession | YP_001350164 |
Protein GI | 152985681 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1459] Type II secretory pathway, component PulF |
TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0274243 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGACCT TCCGCTACGA AGCCGCCGAC GCCCAGGGGC GGATCGAGAC CGGGACCCTG GAGGCGGACA GCCCGCGCGG TGCCCTCGGC CAGCTGCGCG CCCGCGGCCT GACTCCGCTG GAGGTCCGCG AGCAGGCTGG TGGCGGGACC GGGCAAGGGG CGGGCGCGCT GTTCGCCCCA CGCCTGTCCG ACGGCGACCT GGCCTGGGCC ACCCGCCAGC TGGCCAGCCT GCTGGCCGCC AGCCTGCCGC TGGAAGCGGC GCTGAGCGCG ACCCTCGACC AGGCCGAGCG CAAGCATATT GCACAGACCC TCGGCGCCGT GCGCAGCGAC GTGCGCGGCG GCATGCGCCT GGCCGACGCC CTCGCCGCGC GGCCGCGCGA CTTTCCGGAA ATCTACCGGG CGCTGGTGGC GGCGGGCGAG GAGTCCGGCG ACCTGGCCCA GGTAATGGAG CGCCTGGCCG ACTACATCGA GGAACGCAAC GCCTTGCGTG GCAAGATCCT CACCGCGTTC ATCTATCCGG CGGTGGTCGG CGTGGTTTCC ATCGGTATCG TCATCTTCCT CCTCGGCTAC GTGGTGCCGC AGGTGGTCAG CGCCTTTTCC CAGGCGCGCC AGGACCTGCC GGCGCTGACC CGGGTGATGC TCCAGGCCAG TGACTTCGTG CGCGCCTGGG GCTGGCTCTG CGCGGGAGCC CTCGGCGGTG GTTTCTGGGG CTGGCGCCTG TACCTGCGCA ACCCGCAGGC GCGGCTCGAC TGGCATCGCC GGGTGCTGCG CCTGCCCCTG ATCGGCCGCT TCGTGCTCGG GGTGAATACC GCGCGCTTCG CCTCCACCCT GGCGATCCTC GGCAGCGCCG GCGTGCCGCT GCTGCGCGCG CTCGACGCGG CGCGCCAGAC CCTGGCCAAC GACTGCCTGG CGTGGGCGGT GGAGGAGGCC ACCGCGCAGG TTCGCGAGGG CGTCTCGCTG GCCTCGGCGC TGCGCGCGCG GCAGGTATTC CCGCCGATCC TCACCCACCT GATCGCCAGC GGCGAGAAGA CCGGCGCGCT GCCACCGATG CTCGACCGCG CGGCGCAGAC CCTGTCGCGC GACATCGAAC GCCGTGCCAT GGGCATGACC GCGTTGCTCG AACCGCTGAT GATCGTGGTC ATGGGCGGCG TGGTGCTGAT GATCGTGATG GCGGTGCTGA TGCCGATCAT CGAGATGAAC CAACTGGTCC AGTAG
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Protein sequence | MQTFRYEAAD AQGRIETGTL EADSPRGALG QLRARGLTPL EVREQAGGGT GQGAGALFAP RLSDGDLAWA TRQLASLLAA SLPLEAALSA TLDQAERKHI AQTLGAVRSD VRGGMRLADA LAARPRDFPE IYRALVAAGE ESGDLAQVME RLADYIEERN ALRGKILTAF IYPAVVGVVS IGIVIFLLGY VVPQVVSAFS QARQDLPALT RVMLQASDFV RAWGWLCAGA LGGGFWGWRL YLRNPQARLD WHRRVLRLPL IGRFVLGVNT ARFASTLAIL GSAGVPLLRA LDAARQTLAN DCLAWAVEEA TAQVREGVSL ASALRARQVF PPILTHLIAS GEKTGALPPM LDRAAQTLSR DIERRAMGMT ALLEPLMIVV MGGVVLMIVM AVLMPIIEMN QLVQ
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