| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_4198 |
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| Symbol | |
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| ID | 5353586 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa PA7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009656 |
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| Strand | - |
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| Start bp | 4336327 |
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| End bp | 4339644 |
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| Gene Length | 3318 bp |
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| Protein Length | 1105 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640813248 |
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| Product | putative sensor protein |
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| Protein accession | YP_001349552 |
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| Protein GI | 152988780 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3447] Predicted integral membrane sensor domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.350673 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGGACCG GCGCGCTATT CTTTCTCGCC GCCCTGGCCT GCATCTACCT GTCGCGCCAG
CCCGCCACCA TCGCGGCGAT CTGGCTGCCC AACGCGATCC TCGCCGCGGC CCTGCTGCGC
GCGCCGTTGC GCCAATGGCC GATGATCCTG TTCTGCACCG CCCTGGCCAA CCTCGCGGCG
AACCGCCTGT ATGGCGATAG CCTGTGGATG AGCGCGGCCT TCCTTCCGGC CAACCTGAGC
GAGGCGACCT TCGCCGCGAT GCTGTTGCGG ATGAACCGGG TGCGCGAGGA CTTCGATTTC
AACCTGCTTT CGGCGGTGCG CGTGCTCTGG GCCGGCGCGC TGGTACCGCC GTTGCTCGGC
GCCTCGGTGG GGGCGGCGCT GGTCAGCCTG TTCGGCCTGG GAAGCTTCCC GCAGATGTGG
GCGCGCTGGT ATGTCGGCGA TGCGATGGGC ATGCTCGCGC TGCTCCCGCT GTGCCTGGCC
AGCAGCCTGG CGACATGGCG CCACGGGCTC TCCGGGCGCG CCGGGGTGGA CAACGCGATG
CTCTTGCTGG CGACCCTGTT CATCAGCTTC GTGGCCCTGA CCCGGCTGCC GTACTCCTTC
ATCTATGTGC TGCTGCCGCT GCTGGTGGCG GCGGCCAGCA CCAGCGTGTT CGGCACCGCG
CTGATCGGTT GCCTTAACAC CTGCTTCATC GCCGTACTGA TCGCCATGGG TGTGTTCGCT
CCCGAATCGT CCCAGCAGCG CTTCGGCGAA CCGCTGCTGT ACCTGCCGAT GGCCCTGACC
CTGATCCCGG CCTTCCTGGT CTCGGTGATC ATGGAGCGCA GCCGGCGCGA GCAGCATCAG
GTGGCCATCG GCGAGGCGCA ATTCCGCGGG GCCATGGAGT TCTCGGCGAT CGGCACGGCC
CTGGTGGCGC TGGACGGCCG GCTGTTCAAG GTCAACGAGG CGCTGTGCCG GATGCTCGGC
TATCCCGCCG AGCGCGTGGG CGAGCTGACG TTCCAGGCGA TCACCTATGC CGCCGACCTG
GAGCTGGACC TCGACCTGGT CCGCGACCTG CTGGCCGGCC GGATCAATTC CTACCAGATG
GAAAAGCGCT ACCTGCGCCA GGACGGCGAG ACCTTCTGGG CGCGTATCAG CGTGTCGCTG
GTGCGCGACG AGGAAGGCAT CGCCCAGTAC TTCGTGACCC AGGTCGAGGA CATCGACAGC
CGCAAGCGCG CCGAGCTGGA GCGCGAGCGC CTGGCCGAGC GGGTCAAGCT GGCCACCGAT
GCCGGCCAGA TCGGCATCTG GGAATGGGAC CTGCGGCACA ACCGCCTGCA CTGGGACTTC
CGCATGTTCG ATCTCTACGG CATCCGCAGC GGGCCGGGCG AGACCACGGT GGAGCAGTGG
CAGGCGGCCC TCCATCCGGA CGACCACGAG CGTGTGCTGC ACGAGCTGGA TCGCGCCCTC
AGCGGGCTGC AGAAGTTCGA CTGCGAGTTC CGTATCGTCC GTCCGGACCG GCAGGTCCGC
CACCTGCGGG CGATCGCCAC GCTGACCCGC GACGAGGACA GCCGGCCGGT GCGGATGATC
GGCATCAACA GCGACATCAC TGAGATCCGC ACCTTGGCGG AAACCCTGTA CGAGGAAAAG
GAACGCCTGC AGGTCACCCT CTATTCGATC GGCGACGCCG TGCTGACCAC CGATGCCGGC
GGCCGGGTGA CCTTCATGAA CCCGGTGGCC GAGGCGATGA CCGGCTGGAC CCTGCAGGAT
GCACTCGGCG CGCCGCACGA ACTGGTCTTC AACGTGCTCG ACAGCGACAC CGGCGATACC
CTCGACAGCC CGGTGCGACG CTGCCTGCAG AACACCCGGG TGTTCTACCT GGAGGATGGC
GCCACGCTGA TCAGCCGCAA GGGCGAGCAG CACGACATCC AGAATTGCGC GGCGCCGGTG
CGCACCCGTG ACGGCGAGAT CATCGGCACC GTGCTGGTGT TCCAGAACGT CACCAAGGCC
CGGGCGATGC AGCGCGAGCT GAGCTATCAC GCTTCCCACG ATGCCCTCAC CGGGCTGTTC
AACCGCACCA AGTTCGAGGA GGAACTGCGG CGCGCGCTGG CCAATGCGCA GGAGCGGGCG
AGCCAGCATG CGCTGTGCTT CATCGACCTG GACCGCTTCA AGGTGGTCAA CGACTCCGCC
GGACACGCCG CCGGCGACAT GCTGCTGCGC GAGCTGAGCC GGATCCTCGC CGACCGTACC
CGGGCCTCCG ACACCCTGGC GCGCCTGGGC GGCGACGAGT TCGGCCTGCT GCTGTTCGAC
TGCGATCTGG CGGTGGCCGA GGAAGTGGCG AGCAAGCTGA TCGAGCAGAT CTGCTCGGTG
CGCTTCCCCT GGGAGGGGCG GGTCTACGAC GTGGGCGCGA GCATCGGCAT CACCGCGCTC
ACCGCCACCT CGCGCAGCAC CAGCGAACTG ATGAGCCAGG CCGACGTGGC CTGCTACGCG
GCCAAGCACG CCGGGCGCAA CCGGGTCTCG GTGTACCAGT TCGGCCACGA GGAGGTGGAG
CGCCAGCACC GCGACATCCT GCTCGCCAGC GGCCTGCGCG AAGCCCTGGA GAACGACCGT
TTCCAGCTGC AGGCGCAGGA AATCGTGCCG GTCGTCGCGC GCCGCGATGG CGGCCGGCAT
TACGAACTGC TGCTGCGGCT GTACGATCCG GATGGCCAGA TGACCCCGCC GGGCGCCTTC
ATTCCCGCCG CAGAACGCTT CAACCTGATG GCCAGCATCG ACCGCTGGGT GATCAATGAG
GCGCTGATCA ACTTCGGGCC GCGGATCGCC GCCATCGATG GCCTGACCAT CGGCATCAAC
CTGTCCGGCA ATTCGCTCAA CGACCCGCTG TTCCTGCCCT ACCTGCTGGA CCGCATCGAA
CACTCGCCGC TGGGGCCGGA GCGGCTGTAC TTCGAACTGA CCGAGACGGC GCTGATGAAC
CAGCTGTCGG TGGCCTCGCG AATCGTCGAC AAGCTGCGCG ACCTCGGTTG CAAGGTGGCG
CTGGACGACT TCGGCTCCGG CCTGAGTTCG TTCAATTACC TGAAGAACTT CGCCGTCGAT
GCGATCAAGA TCGATGGCAG CTTCGTCCGT AACCTGGACA AGAGCCCGGT GGACCAGGCC
ATCGTCGACT CCATCAACCA GATCGCCCAG CGCCTGGGCG CGGTGACCGT GGCGGAGTTC
GTCGAGAGCC GGGAGATCCT CGACCACCTG GCACGCCTCG GCGTGGACTA CGCCCAGGGC
TACGCGGTGG GACGGCCGCA GCCGTTCGCC ACGGTGCTCG AACAGTTGCG CGGCGCCCGC
CGCCAGGGGC TGGGCTGA
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| Protein sequence | MRTGALFFLA ALACIYLSRQ PATIAAIWLP NAILAAALLR APLRQWPMIL FCTALANLAA
NRLYGDSLWM SAAFLPANLS EATFAAMLLR MNRVREDFDF NLLSAVRVLW AGALVPPLLG
ASVGAALVSL FGLGSFPQMW ARWYVGDAMG MLALLPLCLA SSLATWRHGL SGRAGVDNAM
LLLATLFISF VALTRLPYSF IYVLLPLLVA AASTSVFGTA LIGCLNTCFI AVLIAMGVFA
PESSQQRFGE PLLYLPMALT LIPAFLVSVI MERSRREQHQ VAIGEAQFRG AMEFSAIGTA
LVALDGRLFK VNEALCRMLG YPAERVGELT FQAITYAADL ELDLDLVRDL LAGRINSYQM
EKRYLRQDGE TFWARISVSL VRDEEGIAQY FVTQVEDIDS RKRAELERER LAERVKLATD
AGQIGIWEWD LRHNRLHWDF RMFDLYGIRS GPGETTVEQW QAALHPDDHE RVLHELDRAL
SGLQKFDCEF RIVRPDRQVR HLRAIATLTR DEDSRPVRMI GINSDITEIR TLAETLYEEK
ERLQVTLYSI GDAVLTTDAG GRVTFMNPVA EAMTGWTLQD ALGAPHELVF NVLDSDTGDT
LDSPVRRCLQ NTRVFYLEDG ATLISRKGEQ HDIQNCAAPV RTRDGEIIGT VLVFQNVTKA
RAMQRELSYH ASHDALTGLF NRTKFEEELR RALANAQERA SQHALCFIDL DRFKVVNDSA
GHAAGDMLLR ELSRILADRT RASDTLARLG GDEFGLLLFD CDLAVAEEVA SKLIEQICSV
RFPWEGRVYD VGASIGITAL TATSRSTSEL MSQADVACYA AKHAGRNRVS VYQFGHEEVE
RQHRDILLAS GLREALENDR FQLQAQEIVP VVARRDGGRH YELLLRLYDP DGQMTPPGAF
IPAAERFNLM ASIDRWVINE ALINFGPRIA AIDGLTIGIN LSGNSLNDPL FLPYLLDRIE
HSPLGPERLY FELTETALMN QLSVASRIVD KLRDLGCKVA LDDFGSGLSS FNYLKNFAVD
AIKIDGSFVR NLDKSPVDQA IVDSINQIAQ RLGAVTVAEF VESREILDHL ARLGVDYAQG
YAVGRPQPFA TVLEQLRGAR RQGLG
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