| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_4109 |
|---|
| Symbol | |
|---|
| ID | 5354751 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | + |
|---|
| Start bp | 4242269 |
|---|
| End bp | 4243774 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640813158 |
|---|
| Product | MFS family transporter |
|---|
| Protein accession | YP_001349462 |
|---|
| Protein GI | 152986037 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.573233 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCCGGC AGAACCGCTG GCTGGTCCTG GCCATCGTCT CCAGCGCCCT GTTCCTCATC
ATCATCGACA TGACCGTGCT CTACACGGCC CTGCCGCGCC TGACCCACGA CCTCGGCGCG
ACGGCGGCGG AGAAGCTCTG GATCGTCAAC GCCTACCCGC TGGTGGTCGC CGGCCTGCTG
CCCGGCGCCG GGGTACTCAG CGACCGCCTC GGTCACAAGC GGCTGTTCCT CGCCGGCCTG
CCGCTGTTCG GCCTGGCCTC GCTGTGCGCC GCCTTCGCCC CCGACGCCGG CGCGCTGATC
GGCGCCCGCG CCGGGTTGGC GGTGGGCGCG GCACTGATGA TGCCGGCGAC CTTGTCGATC
GTCCGCCATG TCTTCCAGGA CGAACGCGAA CGCGCCCTGG CCATCGGTAT CTGGGCCTCC
GTCGCCTCCG CCGGCGCGGC GCTGGGGCCG GTGGTCGGCG GAGTGCTGCT GGAGTTCTGC
TGGTGGGGCT CGGTGTTCCT CGTCAACGTC CCGGTGGTGG TCATCGCGCT GCTGCTGGCC
GTGCCGACCA TTCCCGCCTG CGGCGGCCAG TCGCGCAAGC CCTGGGACCC GCTCGGCTCG
CTGCAGGTGA TGCTAGGCCT GGTCGGGCTG GTCTACGCGA TCAAGACGCT CGGCACCCGC
GCCCCCGACT TCTGGCTGGC CGCCGGCGCC GCCCTCGGCG GAACGGCATG CCTATACCTG
TTCGTGCGTC GGCAACGCCG TGCCCGCGAA CCGATGATCG ACTTCGCGCT GTTCCGCAAC
CGGCGCTTCG CCCGCGGCGT CGCGGTGGCC CTGGTGGCGA CCATGGCGCT GGTGGGCATG
GAGCTGGTGT TCAGCCAGCA CCTGCAACTG GTGCAAGGCC TGACGCCGCT GCAGGCCGGC
CTGTTCGTCC TGCCGATCCC GCTGGCCTCG CTGGTGGTCG GGCCGCTGGC CGGCTGGCTG
GTGCCGCGCT GGGGCGAGAA CCGGGTGATG TGCGCCTCCC TGCTGCTCGG CAGCGCCGGA
TTGCTCGGCC TGGCCTTGTC CTACCAGGCC GCCACCGGAG CGCAACTGGC CAGCCTGGTG
TTGCTCGGCG TCGGCTTCGG CGGCGCGATG ACCGCCGCCT CCACCGCGGT GATGCTCAAC
GTAGACGAAC ACAGTTCCGG AATGGCGGCC GCCATCGAGG ACGTGTCCTA CGAATTGGGC
GGGGTGATCG GCGTGACCCT GCTCGGCAGC CTGATGAGTT TCGTCTACGG GATCTCCCTG
GCGCTGCCCT CGCCCGACCT GCCGGCACGG GTCCGTGACA GCCTCGACGA CGCCCTGATG
GTCGCCGAGG GCCTGGCGCC GGAGGTCGCG TCGCGGCTCG TCGAGCTTGC CCGGCAGGCT
TTCGACCAGG CCTTCGTCGC CGTGCTACTG GCCGCCGCCG CGCTGCTCTT CCTCAGCGCC
ATGGCGGTCC TGCGCCAGCC GCGTCCGGCT ACAGAGCCAG CGCCACCAGC ACCGCGCACT
CGGTAA
|
|---|
| Protein sequence | MFRQNRWLVL AIVSSALFLI IIDMTVLYTA LPRLTHDLGA TAAEKLWIVN AYPLVVAGLL
PGAGVLSDRL GHKRLFLAGL PLFGLASLCA AFAPDAGALI GARAGLAVGA ALMMPATLSI
VRHVFQDERE RALAIGIWAS VASAGAALGP VVGGVLLEFC WWGSVFLVNV PVVVIALLLA
VPTIPACGGQ SRKPWDPLGS LQVMLGLVGL VYAIKTLGTR APDFWLAAGA ALGGTACLYL
FVRRQRRARE PMIDFALFRN RRFARGVAVA LVATMALVGM ELVFSQHLQL VQGLTPLQAG
LFVLPIPLAS LVVGPLAGWL VPRWGENRVM CASLLLGSAG LLGLALSYQA ATGAQLASLV
LLGVGFGGAM TAASTAVMLN VDEHSSGMAA AIEDVSYELG GVIGVTLLGS LMSFVYGISL
ALPSPDLPAR VRDSLDDALM VAEGLAPEVA SRLVELARQA FDQAFVAVLL AAAALLFLSA
MAVLRQPRPA TEPAPPAPRT R
|
|---|
| |