| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_3616 |
|---|
| Symbol | |
|---|
| ID | 5356944 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | - |
|---|
| Start bp | 3744965 |
|---|
| End bp | 3746521 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640812666 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001348970 |
|---|
| Protein GI | 152985887 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3515] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03362] type VI secretion-associated protein, VC_A0119 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.432292 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCTATT CAAGCAAGCT CTCCTTGCAT TATCTCGAAC TCGCGGACCA GCCGATTTCA
AAGGATGTCT TTGCGGGGGA AGATGTGCGT TTCTCCAGTG AGTACGAAGC CCTGGAGAAC
GAGCTGGGCA AGGCGCTGTC GCTCCACGAA AGTGGTCAAG TCGACTGGTT GAAGATCCTG
GAAAACAGCG AGGTGCTTCT GCGCACCCAG TCCAAGGACC TGCGTGTCGC CGCTTGGTTG
ACCTGGGCTC TCTACCAGCG CGAGTCCTTT AGCGGGTTGC TGGCCGGCCT GGGACTGCTG
GACCGGTTGT GCTGCAGGCA CTGGGTCGAG ATGCACCCGG CCAAGCCGCG CACCCGAGCC
GCGGCCATCG CCTGGCTGGT GCCTCGATTG GAGCAGGCGC TCAGCGAGAG CGTTCCGCTC
AAGGAGCAAT TCCCCCTATT CCGACGTCTC GTCGAGCATC TGGACAGCCT CGATTCCGTC
TTGACCGAGC AGTTGGGCGA TGAAGCACCG TTGCTCCTGC CTATCAGCCG GCGCCTGGCG
GGCATGCTCC AGCGCACCAC TGACGTCCAG CCGGAGCCCG GGATGGTCGG CGCCATGGTG
GCCCAGGTCA AGCAGGCGGC CAGCCAGTTG CTGGCTCCCG GTACCCCCAT CGACAACGAG
CGTGACGCGC ACAAGTCCAT GCGCGCCCAG CAGGAAGCCG CTCGTTCCCT GTGCGCCTGG
TGGCTGCGGC AGAAAGCCAC CGACCTGCGC GCGCTGCGCC TCAACCGGAC GATGCTCTGG
CTGCCCATCG AGACCATGCC AGAGCGCAAT GGCGAACAGG TCACCGCGCT CAGGGGCGTA
CCGGCGGACA GGCTGAAGAG CTACCAGGAG CGTTTCGCCC AAGGCCTGTA CGCCGACCTG
CTGGTGGAGT TGGAAGCGAG CCTGTCCCGG GCGCCGTTCT GGTTCGACGG GCAGCGTTTG
GTCTGGGAAT GTCTGCAGGG GCTCAATGCC GATAAGGCTA TGCGGGAAGT CGAGATGCAT
TTTGCGCTGC TGCTGCAGCG GTTGCCGGGT TTGGTGGACC TGCGCTTCCA CGATGGCACG
GCGTTTGCCG AACCGGCCAC CCGCAGCTGG ATCAGTGCCC ACGTCATGCC GCATCTACAG
AGTGGCAGCG TCCCGCGCAT GGCGGAGAAC GTGGCGCTAC AGGCCGAGTG GGACATTGCA
CTCGACGAGG CCCAGCCAAT CCTGCGCAAG GACGGCTTGA AAGCCGCAGT AAAGGTCCTC
AAACAGGGCA TGACGCGTGC ACATGGCGGT CGCGCCCGGT TCTTCTGGCA ACTGAGCCTG
GCACGGTTGT GCTTCCTGGC GAAGAAATAC GAACTGGCCA AGACCCAACT GGAAAGCCTC
GACCAGCAGT TGCACGAGTC CGGCCTCAGC GCCTGGGAAC CCGAGCTTGC GCTGGATGTA
CTGCACCTGC TGCACAGTTG CTGCGAGCTG CTGCCGCAGA ACCATGCCGT GCGAGAACGC
AAGGACGACA TTTATCGCAG GCTGTGCCAT CTCGATCTCG AGGTGGTGCT CGAATAG
|
|---|
| Protein sequence | MTYSSKLSLH YLELADQPIS KDVFAGEDVR FSSEYEALEN ELGKALSLHE SGQVDWLKIL
ENSEVLLRTQ SKDLRVAAWL TWALYQRESF SGLLAGLGLL DRLCCRHWVE MHPAKPRTRA
AAIAWLVPRL EQALSESVPL KEQFPLFRRL VEHLDSLDSV LTEQLGDEAP LLLPISRRLA
GMLQRTTDVQ PEPGMVGAMV AQVKQAASQL LAPGTPIDNE RDAHKSMRAQ QEAARSLCAW
WLRQKATDLR ALRLNRTMLW LPIETMPERN GEQVTALRGV PADRLKSYQE RFAQGLYADL
LVELEASLSR APFWFDGQRL VWECLQGLNA DKAMREVEMH FALLLQRLPG LVDLRFHDGT
AFAEPATRSW ISAHVMPHLQ SGSVPRMAEN VALQAEWDIA LDEAQPILRK DGLKAAVKVL
KQGMTRAHGG RARFFWQLSL ARLCFLAKKY ELAKTQLESL DQQLHESGLS AWEPELALDV
LHLLHSCCEL LPQNHAVRER KDDIYRRLCH LDLEVVLE
|
|---|
| |