| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_3603 |
|---|
| Symbol | |
|---|
| ID | 5353600 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | - |
|---|
| Start bp | 3727658 |
|---|
| End bp | 3731185 |
|---|
| Gene Length | 3528 bp |
|---|
| Protein Length | 1175 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640812653 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001348957 |
|---|
| Protein GI | 152985576 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.269333 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACT TCTTCAAGAA AGTCGGCGTC TTCCTGCGCA AGACGTGGGT CTGGACGCTG
TTGCTGGTAC TCCTGGCGGC ATTGCTGGTG TGGTTCGTCG GGCCGCTGCT GGCGGTCGCC
GACTACAAGT TCTGGGAAAG CCCGACCTCG CGGTTGCTGA GCATCAGCCT GATGTTCCTG
GTCTGGGGGT TGGCGATGGT CTTCGTCAGC TGGCGCGCCG GAGTGCGGCG CAAGGCCGTC
GAGGACAGCG ACGAGGGCCA GGAGCGCCTG CGCCGCGACG GTCTGATCGA AGACGAACAG
AAGGAATTGC GCAGCCGCTT CAAGGACGCC TTGCGCACCC TGAAGACCTC CAGCCTGTAC
CGCGGCCGCA GCGAGCGCTG GCGCAACGAG CTGCCCTGGT ACCTGCTGAT CGGCCCGCAG
GGAAGCGGCA AGACCAGCCT GCTGGACTTT TCCGGACTGG AATTCCCGAT CAACCGGATC
GACCGCAAGT TGACCCGTGA CACCGCCGGT ACGCGCTACT GCGACTGGTA CTTCGCCGAC
CACGGCGTCC TGATCGACAC CGCCGGGCGC TACCTGACCC AAGCCGACGG CGAGGTCGAC
GGGGGCGCCT GGGCGACCCT GCTCGGCCTG TTGCGCAAGC GCCGCCGCGC ACGGCCGCTG
AATGGCGTGA TGGTGTCGAT TCCGGTGGAG ACGTTGCTCA GCGACGACGA GATGGCGCTG
GATACGCTGG CTCGCCAGGT GCGCGCGCGT CTGCAGGAAA TCCAGCAGAC CCTGCACCTC
GATCTGCCGG TCTACCTGGT GCTGAGCAAG GCCGACCAGT TGCTCGGCTT CGACGAGTTC
TTCGACCAGT TGAGCCGCGA GGAGAGCGAC CAGGTTCTGG GCACCAGCTT CGGCAAGGAG
CAGAACGGCA CCGATGTGAC GGTCCTGCGC CAGGCGTTCG AGGACCTCCT GCGACGCCTG
AACAGCCAGG TGATCATGCG CATCCACCAG GAACGCGATA CCCTGCGTCG CGGTCGCATC
CTCGACTTTC CGCACCAGCT TGGCCAGATC GGCGAGCGGT TGTGCCTGTT CGTCGAACTC
GCCTTCACCG GCAATCGATA CCAGCGCGCC AGCCGCCTGC GCGGCTTCTA CCTGACCAGC
GCGCCGCACC TGGCCCAGCA GCTGGACGAG GACACCGCCG GCATCGGCGC CAACCTGGGG
ATCGCCAGCG GCCTGCTGCC GACCCTGCGC AACGGGCGCT CGCGCTTCAT CCATCACCTG
CTGAGCCAGG TGATCTTCCC CGAGGCCAAC CTGGCAGGTC TCGATCGCCG CGAACGCACG
CGCATCCACT GGGGCCAGCG CGCCCTGTAC GTCGGTTCGC TGGCGCTCCT TATGCTATTC
GGCCTGCTCT GGGCTGGCGG TTTCTCGGCC AACCACGAGC GCCTGGAGCG GGTGCGCGAG
CTGGCGCAGC AATGGACCCA ACAGCGCCAG GCGCTTGGCG AACGCGATGA CGCCATGGCG
GCGCTGAAGA CGCTGGATAG CAGCTATGCG GCGACCACCG TGTTTCCGCC CAAAGGGGAA
GTCTCGCTGC ACGAGCGCGC CGGGCTGTAC CAGGGCAACG AGGTCAACCC CCCGCTGGCC
GCTGCCTATC GCCGCGAGCT GGAGACGCAA CTGCTGCCGC GTGTGGCGCG GATGCTTGAA
GCGCAGATCC GCGGCAATCT GCAGAATCGC GAACGCCTGC TCAACAGCCT GCGGGCCTAC
CTGATGCTGA ATCTGCGCGA GCGCCGCGAG AACGGATGGC TCAAGGACTG GGTGGCTACC
GACTGGTCGC AGCGCTATGC CGGCAACGGC ACCGTGCAGA ATGGCCTGAA CACGCATTTC
GCCCGTCTGC TCGAGCAACC GTTCAGCTAT CCGCTGAACG ACACCCTGGT GGCCCAGGCA
CGCCAGGTGC TGCGCAGCGA GTCCCTGGCC AACGTGGTCT ACCGGGTGCT GCGCGAACAG
GCGCGAAGCC TGCCCGAGTA TCGCTTCGGC CAGCACCTGG GGCCGCAGGC CGGTCTGTTC
GTCGGCACCG ACTACGTGAT CCCGGGGTTC TATACCCAGC AGGGCTACCA GCAGTACTTC
GTGGTCCAGG GCGCCAGCCT GGTCAACGAT ATCCTTCGCG ACAACTGGGT CCTGGGCGAG
GGCAGCGGGA TCAGCGACAT GGACCTGCGG CGCCTGATGG TCGAACTCGA ACAGCTGTAT
TTCCGCGACT ACGCGAACTT CTGGAGCGAG GCGGTCGGAC GCCTGGGCCT GCTGCCGTTC
AACGATGCCG GCGAGGGTGC CGACCAGATT TCCGGGCTGC TCGCCGCCAA CTCGCCGATC
CTCCAGTTGT TGCTGGAGGT CCGTGAGAAC ACCCGTTTCC CGGTCCTGGC GGAGAGCGCC
GAGGCGCTGG CAGAGGCTAG CGACAAGGCC ACGGAAAAGG GCGGCAAGCT GGGCAAGGCG
GCCGCTGCGG CGGCCGGCAA GGCCAGGGAC GCGTTGGCGA AGAACCTGCC GGATACCGCG
AAGAAGTCCC TGCAACGCCG CTTCGAGCCC CTGCATCGCC TGCTCGACGA TAACAACGGC
CCGGCGGCCG ACCTCACCCC GCTGTTGCAG GCGCTCAACG AGTTGCAGTT GCAACTCGCC
GGACTGGCGC GCGCCAGCCA GCCGGAGCAG GCGGCTTTCG ACATGGCGAA GAGCCGCATG
GGCGGCCAGC GCGATGCCCT GAGCAACCTG CGCAACGCCT CCGCGCGACT GCCGCGACCG
CTCGGCGGAT GGTTCAGCGT ACTGGCCGAA GACGCCTGGC GGCTGGTCCT CGGCGATGCC
TACCTGTACC TCAACCAGCG CTACCAGAGC GAGCTGTACG GTTTCTACAG CAAGGCGATC
AACAAGCGCT ACCCGTTCAA CGCGCACAGC GCCAGCGATG TCGCGGTCAG CGATTTTCGC
GAGTTCTTCA AGGCGCAGGG CGTCGCCGAA CGCTTCTTCG AAACCTACAT GCGGCCCTTC
GTCAGCGGTG ACCCGGGCAG CTACCGCCTG CGCAGCGTGG ACGGCTACAG CCTGCCGATG
TCCAAGGTCT ATCTCGACCA GATGGGCACG GCCCTGGTGA TTCGCCAGAG CTTCTTCGCC
GAGAACCCGG CCGAGCCGCA GGTGCGCTTC CGCCTGGAGC CCTATACCCT CGATCCTGGC
GTCAGCCGCG CCGAGTTCCG TTTCGACGGT CAATCCATGG AATACCGCCA CGGCCCGATC
GTGCCGATGT CGTTCAAGTG GCCCAGCGAC GCCGACGGCG GCCGCACCAG CCTGGTGCTG
GAGAGGATGG CCGGGCGACC GGTGGGAGTC GAACGCAATA CCGGGCCCTG GTCGCTGTTC
AGGCTGTTCG ACCTGATGCA GACCGAGTAC CTCAGCGGGC GTGACGTGAT GGTGCTCAAG
GCCGACCTGG GCGGCCTGCG CGCCAACTAC CTGCTGCTCG CCCAGCGCAC GCCGAATCCG
TTCGATCTCG CGGTCCTGCG CAGCTTCCGC ATGCCGGTGC AGCTCTGA
|
|---|
| Protein sequence | MKNFFKKVGV FLRKTWVWTL LLVLLAALLV WFVGPLLAVA DYKFWESPTS RLLSISLMFL
VWGLAMVFVS WRAGVRRKAV EDSDEGQERL RRDGLIEDEQ KELRSRFKDA LRTLKTSSLY
RGRSERWRNE LPWYLLIGPQ GSGKTSLLDF SGLEFPINRI DRKLTRDTAG TRYCDWYFAD
HGVLIDTAGR YLTQADGEVD GGAWATLLGL LRKRRRARPL NGVMVSIPVE TLLSDDEMAL
DTLARQVRAR LQEIQQTLHL DLPVYLVLSK ADQLLGFDEF FDQLSREESD QVLGTSFGKE
QNGTDVTVLR QAFEDLLRRL NSQVIMRIHQ ERDTLRRGRI LDFPHQLGQI GERLCLFVEL
AFTGNRYQRA SRLRGFYLTS APHLAQQLDE DTAGIGANLG IASGLLPTLR NGRSRFIHHL
LSQVIFPEAN LAGLDRRERT RIHWGQRALY VGSLALLMLF GLLWAGGFSA NHERLERVRE
LAQQWTQQRQ ALGERDDAMA ALKTLDSSYA ATTVFPPKGE VSLHERAGLY QGNEVNPPLA
AAYRRELETQ LLPRVARMLE AQIRGNLQNR ERLLNSLRAY LMLNLRERRE NGWLKDWVAT
DWSQRYAGNG TVQNGLNTHF ARLLEQPFSY PLNDTLVAQA RQVLRSESLA NVVYRVLREQ
ARSLPEYRFG QHLGPQAGLF VGTDYVIPGF YTQQGYQQYF VVQGASLVND ILRDNWVLGE
GSGISDMDLR RLMVELEQLY FRDYANFWSE AVGRLGLLPF NDAGEGADQI SGLLAANSPI
LQLLLEVREN TRFPVLAESA EALAEASDKA TEKGGKLGKA AAAAAGKARD ALAKNLPDTA
KKSLQRRFEP LHRLLDDNNG PAADLTPLLQ ALNELQLQLA GLARASQPEQ AAFDMAKSRM
GGQRDALSNL RNASARLPRP LGGWFSVLAE DAWRLVLGDA YLYLNQRYQS ELYGFYSKAI
NKRYPFNAHS ASDVAVSDFR EFFKAQGVAE RFFETYMRPF VSGDPGSYRL RSVDGYSLPM
SKVYLDQMGT ALVIRQSFFA ENPAEPQVRF RLEPYTLDPG VSRAEFRFDG QSMEYRHGPI
VPMSFKWPSD ADGGRTSLVL ERMAGRPVGV ERNTGPWSLF RLFDLMQTEY LSGRDVMVLK
ADLGGLRANY LLLAQRTPNP FDLAVLRSFR MPVQL
|
|---|
| |