| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_3420 |
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| Symbol | gspD2 |
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| ID | 5355172 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa PA7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009656 |
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| Strand | - |
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| Start bp | 3545781 |
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| End bp | 3548057 |
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| Gene Length | 2277 bp |
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| Protein Length | 758 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640812471 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001348780 |
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| Protein GI | 152986624 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.454827 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTCTTCGC TGTTCCTGCT GCTGGCGCTC GTCACTCCCG GCCTGGCGGC GACGGCGCAT
CCGGCGCCTG CCGCCACTGC CGCCGCGCAG GAGGAAGAGC AGTGGACGAT CAACATGAAG
GAGGCCGAGC TCGGCGACTT CATCGAGCAG GTCTCGGCCA TCAGTGGCCA GACTTTCATC
GTCGATCCGC GAGTGAAGGG TCGGGTCACG GTGGTTTCCC AGGCGCGGCT GAACCTGGCG
GAGGTCTACC AGCTGTTCCT TTCGGTGCTC GCCACTCATG GCTACGCGGT GCTGCCCCAG
GACGGGCAGG CGCGCATCGT GCCGAACATG GAGGGGCGCC AGGACGCCGC CGGTGGCGGC
GTCCACGTCG GGCCGGGCAG CCTGGAGACG CGGGTGATCC AGGCCCGGCA GACCTCGGTG
GTGGAGCTGA TCCCGATGAT CCGTCCGCTG GTCCCGGCCC ACGGCCATCT CGCGGCGGTA
CCCTCGGCCA ATGCGCTGAT CGTCAGCGAC CGGCGCGCCA ACATCGAGCG CATCGAGTCG
ATCGTGCGCA GCCTCGACCA GGCCGGCGAG CACGACTACA GCATCTACGA CCTGCGCCAT
GCCTGGGTCG CGGAAATCGC CGAGGTGCTC GACCAAAGCG TCACCCCGGC CGCCGGAAAG
AACGCCGCCA CCGTCCAGGT CCTCGCCGAC AGTCGCAGCA ACCGCCTGGT CCTGCTCGGC
CCGCCACAGG CGCGGGCCCG GCTGTTGCGC CTGGCGCAGT CGCTGGACGT GCCATCGTCG
CGCTCGGCCA ACAGCCGGGT GATCCGCCTG CGCCATGGCG ACGCCAAGAC CATCGCCAGC
ACCCTGGGAG AGATCGGCGA GTCGCTGCGG GAGGGCGGGG ATCAGGGACA GCGGCGCAGC
GGCAAGCGCG GCGCGCTGGT GCGTGCCGAC GAATCGTTGA ATGCGCTGGT GATCCTCGCC
GATCCGCAGG AGGTCGGATT GTTCGAGGAG ATCGTCCGCC AACTCGACGT GCCGCGCGCG
CAGTTGCTGG TGGAGGCGGC GATCGTCGAA CTGACCGGCG AACTCAACGA GGCGCTCGGC
GTGCAATGGG CCATGCGCGG CGGGCATGCC GTCGGCGGCA CCAGCTTCGC CGGCAGCGGA
CTGTCCATCG GCACGCTGCT CGGTGCGCTG CAGAGCGGCA AGCCACCAGC CGAGCTACCG
GATGGCGCCA TCGTTGGCCT TGGCAGCCGC GACTTCGGCG CACTGATCAC CGCGCTGACC
CGCAACAGCA ACAGCAACCT GCTGTCGACC CCGAGCCTGC TGACCCTGGA CAACCAGAAG
GCGGAGATCC TGGTCGGGCA GAATGTACCG TTCCAGACCG GTTCCTACAC CACCAACAGC
GAAGGATCGA GCAACCCCTT CACCACTGTC GAGCGCAAGG ACATCGGAGT GACCCTGAAG
GTGACCCCGC ATATCGGCGA CGACCGCATG CTGCGCCTGG AAATAGAGCA GGAGATCTCC
TCGATCGCGC CAGCGGCCAC GCTGGCGGCC AAGACGGTGG ACCTGGTGAC CAACAAGCGC
TCGATCAAGA GCACGGTACT CGCCGACGAC GGCCAGGTGA TCGTGCTTGG CGGGCTGATC
CAGGACGACG TGGTGCGCAG CGACTCGCGG GTGCCCCTGC TCGGCGACAT TCCCGGGGTC
GGCCGGCTGT TTCGTTCGAC CCGGGACACC CGGGTGAAGC GCAACCTGAT GGTCTTCCTG
CGCCCGAGCA TCGTCCGCGA CGCCGTCGGC CTGGCACGGG TCAGCCAGGG CCGCTACCGT
TCCATCCAGG TATTGCGCGG CGCCTCGACT CCCTTGTTCG ACGCCGCCCC GGCCATCGAC
CTGCGCCCCG CCGCGCAGGC CCTGCCGGCG CTTCCCGAGT CGCCGCGCGG CTACCCGGAT
CCGGCCCCGG TGCTGATGGA GAAGCCGCGC CTGGCGGACC CGGCGAGCCT GGGCAACGGC
CGTGGCGGCG AGGTGCTGGA GGTGCGCGAG AGCGAGCCCA CGGCGGCGCC AGCGCGGCGT
TACACGGTGC GCCTGATCGA GGGTAGCAGC GAGGCGTTCA TGCGGGCGCT GATCGAACGC
CACGCGGGGC TAGCCTTGCG CCTGCGCCGC GAGAAGCGCG ACGACGGCGA GTGGTTCGCC
GTGGAGCAGG GCGATTTCGC CGATCCGCGG CAGGCGCAGC GGGCCCTGGC CGGATTGCCG
GAGAGCCTGC CGCGGGCCAG GGCGCGGGTG GTAGCGCGCA CCCAGGAAAG GCTGTGA
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| Protein sequence | MSSLFLLLAL VTPGLAATAH PAPAATAAAQ EEEQWTINMK EAELGDFIEQ VSAISGQTFI
VDPRVKGRVT VVSQARLNLA EVYQLFLSVL ATHGYAVLPQ DGQARIVPNM EGRQDAAGGG
VHVGPGSLET RVIQARQTSV VELIPMIRPL VPAHGHLAAV PSANALIVSD RRANIERIES
IVRSLDQAGE HDYSIYDLRH AWVAEIAEVL DQSVTPAAGK NAATVQVLAD SRSNRLVLLG
PPQARARLLR LAQSLDVPSS RSANSRVIRL RHGDAKTIAS TLGEIGESLR EGGDQGQRRS
GKRGALVRAD ESLNALVILA DPQEVGLFEE IVRQLDVPRA QLLVEAAIVE LTGELNEALG
VQWAMRGGHA VGGTSFAGSG LSIGTLLGAL QSGKPPAELP DGAIVGLGSR DFGALITALT
RNSNSNLLST PSLLTLDNQK AEILVGQNVP FQTGSYTTNS EGSSNPFTTV ERKDIGVTLK
VTPHIGDDRM LRLEIEQEIS SIAPAATLAA KTVDLVTNKR SIKSTVLADD GQVIVLGGLI
QDDVVRSDSR VPLLGDIPGV GRLFRSTRDT RVKRNLMVFL RPSIVRDAVG LARVSQGRYR
SIQVLRGAST PLFDAAPAID LRPAAQALPA LPESPRGYPD PAPVLMEKPR LADPASLGNG
RGGEVLEVRE SEPTAAPARR YTVRLIEGSS EAFMRALIER HAGLALRLRR EKRDDGEWFA
VEQGDFADPR QAQRALAGLP ESLPRARARV VARTQERL
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