| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_3173 |
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| Symbol | ligD |
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| ID | 5355140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa PA7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009656 |
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| Strand | - |
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| Start bp | 3284226 |
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| End bp | 3286769 |
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| Gene Length | 2544 bp |
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| Protein Length | 847 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640812224 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_001348533 |
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| Protein GI | 152983639 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCAGCA AGCCGCTCGC CGAGTACGCG CGCAAGCGCG ATTTCCGCCA GACCCCGGAG
CCCAGTGGGC GCAAGCGCCG CAAGGACGGC GACGGCCTGC TCCGCTATTG CATCCAGAAG
CACGACGCCA GCCGGCTGCA CTACGATTTC CGCCTGGAAC TGGACGGCAC CCTGAAGAGC
TGGGCGGTGC CCAAGGGACC ATGCCTCGAC CCGGCGGTGA AACGGCTCGC GGTGCAGGTG
GAGGACCACC CGCTGGACTA CGCCGACTTC GAAGGCAGCA TACCCAAGGG CCACTACGGC
GCCGGCGACG TGATCGTCTG GGACCGTGGC GCCTGGACGC CTCTAGACGA CCCGCGCGAA
GGGCTGGAGA AAGGTCATCT CAGCTTCCTC CTCGACGGCG AGAAACTCTC CGGGCGCTGG
CACCTCATCC GCACCAACCT GCGCGGCAAG CAGCCCCAGT GGTTCCTGGT CAAGTCCAAG
GACGACGAGG CGCGCAGCCT GGATCGCTTC GATGTGCTGA AGGAACGTCC CGACAGCGTG
CTCAGCGAGC GCACGCTGGT GCCCCGCCGC GGCGAAGCCG CCACGCCCGC GGCCAGGCCC
GCGCGACGCG GCAAGGCCGG CAAAGCCGGC AAGGGCGGCG GGAAGACGCC GATGCCCGAG
TGGATCGCCC CCGAACTGGC CAGCCTGGTC GAGCAGCCGC CGCACGGGCA ATGGGCCTAC
GAGCTCAAGC TGGACGGCTA CCGGCTGATG AGCCGCATCG AGGACGGCCA CGTGCGCCTG
CTGACCCGCA ACGGCCACGA CTGGAGCGAA CGCCTGCCGC ACCTGAAGAA GGCCTTGGCC
GGGCTCGGCC TTGAGCGCAG TTGGCTGGAC GGCGAGCTGG TGGTCCTCGA CGAGGAGGGC
CGGCCGGACT TCCAGGCCCT GCAGAACGCC TTCGAGGAGG GCCACGGCGA AAACATCCTG
TATTTCCTTT TCGACCTGCC GTATCACGAA GGCGAGGACC TGCGCGATGT CGCCCTGGAA
GAGCGCCGCG CGCGCCTGGA GGCGCTGCTG GACGGGCAGG ACGAAGACCC CCTGCGGTTC
TCCGCGACGC TCGCGGAAAA CCCCCGCGAC CTGCTGGCCA GCGCTTGCAG GCTCGGCCTC
GAAGGCGTGA TCGGCAAGCG CCTGGGCAGC GTCTACCGCT CGCGCCGCAG CAACGACTGG
ATCAAGCTCA AGTGCCAGTT GCGCCAGGAG TTCGTGATCG TCGGCTACAC CGAGCCGAAG
GGCTCTCGCC GGCACATCGG CGCCTTGCTT CTCGGCCTCT ACAGCCCGGA CGAGGAACGC
CGGCTGCGCT ACGCCGGCAA GGTCGGCACC GGCTTCACCG CCGCCAGCCT GAAGAAGGTC
CATGAGCGCC TGGCGCCCCT GGCGATCAAT TCCAGCCCGC TGGCGAAGGT ACCGCCGGCG
CGCGAGACCG GCGTGGTGCA GTGGGTGCGG CCGGAACGAC TGTGCGAGGT TTCCTATGCG
CAGATGACCC GTGGCGGGAT CATCCGCCAG GCGGTGTTCC ACGGTTTGCG CGAAGACAAA
CCGGCGCGCG AGGTGACCGG CGAACGTCCG GCCGGCCCGC CGCCGGCGCG CGGCGCGCGC
AAGGCCGGGA GCGCGAGCGG CGCCTCGCGG GCGGCCACCG CCGGGGTACG CATCAGCCAT
CCGCGGCGGC TGATCGATCC ATCGATCCAG GCCAGCAAGC TGGAACTCGC CGAGTTCCAT
GCGCGCTACG CCGACCTGCT CCTGCGCGAC CTGCGCGAGC GCCCGGTGTC GCTGGTCCGC
GGCCCCGATG GCATCGGCGG CGAACTGTTC TTCCAGAAGC ACGCGGCGCG CCTGAAGATC
CCCGGTATCG TCCAGCTCGA CCCGGCGCTC GATCCTGGCC ATCCGCCGCT TCTGCAGATC
CGCAGCGCCG AGGCGCTGGT CGGCGCGGTG CAGATGGGCA GCATCGAATT CCACACCTGG
AACGCCAGCC TGGCCAACCT GGAGCGGCCC GACCGCTTCG TCCTCGATCT CGATCCGGAC
CCGGCGCTGC CGTGGAAACG CATGCTCGAG GCGACCCAAC TGAGCCTCAC GCTGCTCGAC
GAGCTGGGCC TGCGTGCCTT CCTCAAGACC AGCGGCGGCA AGGGCATGCA CCTGCTGGTA
CCGCTGGAGC GCCGGCATGG CTGGGACGAG GTGAAGGCTT TCGCGCAGGC CATTTCCCAG
CACCTGGCGC GGCTGATGCC GGAGCGCTTC TCGGCGGTTT CCGGGCCGCG CAACCGGGTC
GGCAGGATCT TCGTCGACTA CCTGCGCAAC AGCCGCGGCG CCAGCACCGT GGCCGCCTAC
TCGGTACGCG CCCGCGAAGG GCTGCCGGTG TCGGTGCCGG TGTTCCGCGA GGAGCTCGAC
TCGCTGCAGG GCGCCAACCA GTGGAACCTG CGCAGCCTGC CGCAGCGCCT CGATGAACTC
GCCGGCGACG ATCCCTGGGC CGACTATGCC GGCACCCGCC AACGCCTCAG CGCCGCCATG
CGCCGCCAGC TCGGCCGCGG CTGA
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| Protein sequence | MPSKPLAEYA RKRDFRQTPE PSGRKRRKDG DGLLRYCIQK HDASRLHYDF RLELDGTLKS
WAVPKGPCLD PAVKRLAVQV EDHPLDYADF EGSIPKGHYG AGDVIVWDRG AWTPLDDPRE
GLEKGHLSFL LDGEKLSGRW HLIRTNLRGK QPQWFLVKSK DDEARSLDRF DVLKERPDSV
LSERTLVPRR GEAATPAARP ARRGKAGKAG KGGGKTPMPE WIAPELASLV EQPPHGQWAY
ELKLDGYRLM SRIEDGHVRL LTRNGHDWSE RLPHLKKALA GLGLERSWLD GELVVLDEEG
RPDFQALQNA FEEGHGENIL YFLFDLPYHE GEDLRDVALE ERRARLEALL DGQDEDPLRF
SATLAENPRD LLASACRLGL EGVIGKRLGS VYRSRRSNDW IKLKCQLRQE FVIVGYTEPK
GSRRHIGALL LGLYSPDEER RLRYAGKVGT GFTAASLKKV HERLAPLAIN SSPLAKVPPA
RETGVVQWVR PERLCEVSYA QMTRGGIIRQ AVFHGLREDK PAREVTGERP AGPPPARGAR
KAGSASGASR AATAGVRISH PRRLIDPSIQ ASKLELAEFH ARYADLLLRD LRERPVSLVR
GPDGIGGELF FQKHAARLKI PGIVQLDPAL DPGHPPLLQI RSAEALVGAV QMGSIEFHTW
NASLANLERP DRFVLDLDPD PALPWKRMLE ATQLSLTLLD ELGLRAFLKT SGGKGMHLLV
PLERRHGWDE VKAFAQAISQ HLARLMPERF SAVSGPRNRV GRIFVDYLRN SRGASTVAAY
SVRAREGLPV SVPVFREELD SLQGANQWNL RSLPQRLDEL AGDDPWADYA GTRQRLSAAM
RRQLGRG
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