Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPA7_3070 |
Symbol | opdE |
ID | 5355902 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa PA7 |
Kingdom | Bacteria |
Replicon accession | NC_009656 |
Strand | + |
Start bp | 3181639 |
End bp | 3182847 |
Gene Length | 1209 bp |
Protein Length | 402 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640812120 |
Product | membrane protein OpdE |
Protein accession | YP_001348429 |
Protein GI | 152983651 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAACCC GCGCACTCGA TACCGCCAAC GAAAACCCTG AACAATCGGG CTCCTGGAGT GGCGTCCTGG CCATTGCGGT TTGCGCCTTC GCACTGGTCG CGTCGGAGTT CCTGCCGGTC AGCCTGCTGA CTCCCATCGC CAACGACCTG GGAACTACCG AGGGCATGGC AGGCCAGGGC ATCGCCATCT CCGGCGCCTT CGCCGTTTTA ACCAGCCTGT TCATTTCATC CGTTGCCGGC AGCCTGAACC GCAAGACGCT GTTGCTGGGA CTGACGGCGG CAATGGGCAT GTCCGGCGCA ATCGTCGCGC TCGCGCCAAA CTATTTCGTC TACATGCTGG GCCGGGCGCT GATCGGCATA GTGATCGGCG GCTTCTGGTC GATGTCGGCA GCCACGGCCA TGCGCCTGGT GCCTGCCAAC GACGTGCCGC GAGCCCTGGC CCTCGTCAAT GGCGGCAACG CTCTGGCGAC AGTGGTGGCC GCGCCGCTGG GCGCCTGGCT AGGCACCCTC ATCGGCTGGC GAGGGGCTTT TCTCTGCCTT GTGCCGGTAG CCCTGGTGGC ACTGGCCTGG CAATGGACCA CCCTGCCCTC CATGCGGGCC GGCGCGCGTG CTCCCGGCCC GGGCAATGTG TTCACGGTAT TCGCTCTGCT CAAGCGTCCC GGTGTGATGC TCGGCATGCT CGCCAGCAGC CTGTTCTTCA TGGGCCAGTT TTCCCTGTTC ACCTATGTGC GACCATTCCT GGAGACGGTC ACCGGCGTAC ATGGCGCGCA TGTTTCGCTG GTACTGCTGG TGATCGGTGC AGCGGGCTTT ATCGGCACCC TGCTGATCGA CCGGGTTCTG CAACGGCGCT TCTTCCAGAC ACTGGTCGCC ATCCCGTTGC TGATGGCCCT GATCGCCCTG GTACTGACGG TCCTTGGCGG CTGGCCCGCC ATCGTTGTCG TCCTGCTCGG ATTGTGGGGA CTGACCGGTA CCTCGGCCCC CGTCGGTTGG TGGGCCTGGA TCGCCAGGGT GTTCCCAGAG GACGCCGAAG CCGGTGGCGG CCTGTTCGTC GCCGTGGTGC AACTCTCCAT TGCCCTGGGC TCCACATTGG GTGGTCTGCT GTTCGATCGC ACTGGCTATC AGGCGACCTT CTTCGCCAGC GCCGCGTTGC TGCTGATCGC AGCCTTCCTG ACCATCCTCA CCGCACGCTC GAAAGCCCCG GCCGGCTAG
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Protein sequence | MTTRALDTAN ENPEQSGSWS GVLAIAVCAF ALVASEFLPV SLLTPIANDL GTTEGMAGQG IAISGAFAVL TSLFISSVAG SLNRKTLLLG LTAAMGMSGA IVALAPNYFV YMLGRALIGI VIGGFWSMSA ATAMRLVPAN DVPRALALVN GGNALATVVA APLGAWLGTL IGWRGAFLCL VPVALVALAW QWTTLPSMRA GARAPGPGNV FTVFALLKRP GVMLGMLASS LFFMGQFSLF TYVRPFLETV TGVHGAHVSL VLLVIGAAGF IGTLLIDRVL QRRFFQTLVA IPLLMALIAL VLTVLGGWPA IVVVLLGLWG LTGTSAPVGW WAWIARVFPE DAEAGGGLFV AVVQLSIALG STLGGLLFDR TGYQATFFAS AALLLIAAFL TILTARSKAP AG
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