| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_2157 |
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| Symbol | mfd |
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| ID | 5353783 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa PA7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009656 |
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| Strand | - |
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| Start bp | 2210938 |
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| End bp | 2214384 |
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| Gene Length | 3447 bp |
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| Protein Length | 1148 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640811210 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001347529 |
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| Protein GI | 152985046 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCCGTAC TGCGTCTTCC AAGCCTGCCG GCCAGCGCCG GCAAGCAACA CTGGGGCAAC
CTCCCCGGTG CCGCGCTGAG CCTGGCTGTC GCCGAGGCCG CCAGTTCCGC CAAGCGCTTC
ACCCTGCTGC TGACCGCCGA CAGCCAGAAT GCCGAACGCC TGGAACAGGA ACTACGGTTC
TTCGCCCCCG ACCTGCCGGT ACTGCATTTC CCCGATTGGG AAACCCTGCC CTACGACGTC
TTTTCGCCGC ACCAGGACAT CATTTCCCAG CGTATCGCCG CTCTCTACCA GTTGCCACAG
CTCAGGCACG GCGTGCTGGT GGTGCCGATC TCCACGGCCC TGCACCGCCT GGCGCCCACG
CGCTTCCTGC TCGGCAGCAG CCTGGTCCTG GATATCGGCC AGAAACTCGA CGTCGAGCGG
ATGCGCCTGC GCCTGGAAGG CGCCGGCTAC CGCTGTGTCG ATACCGTCTA CGAACACGGC
GAGTTCGCCG TTCGCGGCGC GCTGATCGAC CTGTTCCCGA TGGGCAGCGA GCTGCCCTTC
CGTATCGATC TGTTCGATGA CGAGATCGAG ACCCTGCGCA CCTTCGACCC GGAGACCCAG
CGCTCCATCG ACAAGGTCGA GTCGATCCGC CTGCTGCCGG CGCGCGAGTT CCCTCTCAAC
AAGGAAGCGG TCACCGGCTT CCGCGGCCGC TTCCGCGAGC GCTTCGACGT CGACTACCGG
CGCTGCCCGA TCTACCAGGA TCTCGCCAGC GGTTTGACAC CCTCGGGAAT CGAGTACTAC
CTGCCGCTGT TCTTCGAGGA AACCGCCACC CTCTTCGACT ACCTGCCGCA GGACACCCAG
GTGTTCTCCC TGCCCGGTAT CGAGCAGGCC GCCGAGCAGT TCTGGGGCGA CGTGCGCAGC
CGCTACGAGG ACCGCCGGGT CGATCCGGAA CGCCCGCTGC TGCCGCCGGC AGAAGTATTC
CTGCCGGTGG AAGACTGCTT CGCCCGACTG AAGAACTGGC CACGGGTGGT CGCCAGCCAG
GAGGACGTCG AGCCGGGCGT CGGCCGCGAG CGCTTCCCGG CCCTGCCGCT GCCGAACCTG
GCGATCGAAG CCAAGGCCGC CGAACCGCTG GCCGCGCTGC GCCGGTTCAT CGAGGAATTC
CCCGGCCGCG TACTGTTCTG CGCCGAAACG GCCGGACGCC GGGAGGTGCT GCTGGAGCTG
CTGGCCCGGC TGAAGCTGCG TCCCGAGGAA GTCGACGGTT GGCCGGCCTT CCTCGCCAGC
CAGGCACGCC TGGCGATCAG CATCGCGCCG CTGGACGAGG GTCTGCTGCT GGACCACCCG
GCACTCGCCC TGGTCGCCGA AAGCCCGCTG TTCGGCCAGC GCGTCATGCA GCGCCGGCGC
CGGGAAAAGA CCCGCGACGG CGGCGACGCG GTGATCAAGA ACCTCACCGA GCTGCGCGAA
GGCGCACCAG TGGTGCACAT CGACCATGGC GTCGGCCGCT ACCTGGGCCT GATCACCCTC
GAGGTGGACA ACCAGCAGGC GGAATTCCTC ATGCTGCAAT ACGCCGAGGA CGCCAAGCTC
TACGTGCCGG TCGCCAACCT GCACCTGATC GCCCGCTACA CCGGCGCCGA CGACGCCCTC
GCGCCGCTGC ACCGGCTCGG CTCGGAAACC TGGCAGAAGG CCAAGCGCAA GGCCGCCGAG
CAGGTCCGCG ACGTCGCTGC CGAGCTGCTC GACATCTACG CCCGCCGCGC GGCCCGCGAA
GGCTTCGCCT TCAAGGACCC GCAGGCCGAC TACGCGACCT TCTCCGCCGG CTTCCCCTTC
GAGGAAACCC CGGACCAGCA GAGCGCCATC GAGGCGGTGG TGGCCGACAT GCTGGCGCCC
AGGCCGATGG ACCGCCTGGT CTGCGGCGAC GTCGGCTTCG GCAAGACCGA GGTGGCCATG
CGCGCGGCGT TCGTCGCCGT GCACAGCGGC AAGCAGGTGG CGGTGCTGGT GCCGACCACC
CTGCTCGCCC AGCAGCACTA CAACAGCTTC CGCGACCGCT TCGCCGACTG GCCGGTCAAC
GTCGAGGTGA TGAGCCGCTT CAAGAGCGCC AAGGAAGTCG AGAGCGCCGC GCGACAGTTG
GCCGAAGGCA AGATCGACAT CCTCATCGGT ACCCACAAGC TGCTCCAGGA AGACGTCAGG
TTCGCCAACC TGGGCCTGGT CATCATCGAC GAGGAACACC GTTTCGGAGT GCGCCAGAAG
GAACAGCTCA AGGCGCTGCG CAGCGAGGTG GACATCCTCA CCCTCACCGC CACGCCGATC
CCGCGTACCC TCAACATGGC CGTCTCCGGC ATGCGCGACC TGTCGATCAT CGCCACCCCG
CCGGCGCGCC GCCTGTCGGT GCGTACCTTC GTCATGGAGC AGCAGAACGC GGTGATCAAG
GAAGCCCTGC TCCGCGAGCT GCTGCGCGGC GGCCAGGTGT ACTACCTGCA CAACGAAGTG
AAGACCATCG AGAAGTGCGC CCGCGACCTC GCCGAGCTGG TCCCGGAAGC GCGCATCGGC
ATCGGCCACG GACAGATGCA CGAGCGCGAG CTGGAACAGG TGATGAGCGA CTTCTACCAC
AAGCGCTTCA ACGTGCTGGT GGCCTCGACC ATCATCGAGA CCGGCATCGA CGTGCCCAGC
GCCAACACCA TCCTCATCGA GCGCGCCGAC AAGTTCGGCC TGGCCCAGTT GCACCAGTTG
CGCGGCCGCG TCGGTCGCAG CCACCACCAG GCGTACGCCT ACCTGCTGAC GCCGCCGCGC
CGGCAGATGA CCCCGGATGC CGAGAAACGC CTGGAAGCCA TCGCCAACGC CCAGGACCTG
GGCGCCGGCT TCGTCCTCGC CACCCATGAC CTGGAGATCC GCGGCGCCGG CGAACTGCTC
GGCGACGGGC AGAGCGGGCA GATCCAGGCG GTCGGTTTCA CCCTCTACAT GGAAATGCTC
GAGCGCGCGG TGAAGGCCAT CCGCAAGGGC GAGCAGCCGA ACCTCGAGCA GCCGCTGGGC
GGCGGCCCGG AGGTCAACCT GCGGGTACCG GCGCTGATCC CCGAGGACTA CCTGCCCGAC
GTGCACGCCC GGCTGATCCT CTACAAGCGC ATCGCAAACG CCGCCGACGA GGACGGCCTG
CGCGAACTGC AGGTGGAAAT GATCGATCGA TTCGGCCTGC TGCCCGATCC GGCGAAGAAC
CTGATGCGTC TGACGCTTCT GAAATTGCAG GCGGAAAAGC TTGGAATCCT CAAGGTCGAT
GCCGGACCAC AGGGTGGTCG TATAGAATTC GCCGCCGATA CCCAGGTCGA TCCGCTGGTC
CTGATCAAGC TGATCCAGGG CCAGCCGAAC CGCTACAAGT TCGAAGGCGC CACCCTGTTC
CGCTTCCAGG TACCCATGGA ACGACCGGAA GAACGCTTCA ATACCCTGGA GGCGCTGTTC
GAGCGCCTCG CACCGCAAAC CACCTAA
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| Protein sequence | MSVLRLPSLP ASAGKQHWGN LPGAALSLAV AEAASSAKRF TLLLTADSQN AERLEQELRF
FAPDLPVLHF PDWETLPYDV FSPHQDIISQ RIAALYQLPQ LRHGVLVVPI STALHRLAPT
RFLLGSSLVL DIGQKLDVER MRLRLEGAGY RCVDTVYEHG EFAVRGALID LFPMGSELPF
RIDLFDDEIE TLRTFDPETQ RSIDKVESIR LLPAREFPLN KEAVTGFRGR FRERFDVDYR
RCPIYQDLAS GLTPSGIEYY LPLFFEETAT LFDYLPQDTQ VFSLPGIEQA AEQFWGDVRS
RYEDRRVDPE RPLLPPAEVF LPVEDCFARL KNWPRVVASQ EDVEPGVGRE RFPALPLPNL
AIEAKAAEPL AALRRFIEEF PGRVLFCAET AGRREVLLEL LARLKLRPEE VDGWPAFLAS
QARLAISIAP LDEGLLLDHP ALALVAESPL FGQRVMQRRR REKTRDGGDA VIKNLTELRE
GAPVVHIDHG VGRYLGLITL EVDNQQAEFL MLQYAEDAKL YVPVANLHLI ARYTGADDAL
APLHRLGSET WQKAKRKAAE QVRDVAAELL DIYARRAARE GFAFKDPQAD YATFSAGFPF
EETPDQQSAI EAVVADMLAP RPMDRLVCGD VGFGKTEVAM RAAFVAVHSG KQVAVLVPTT
LLAQQHYNSF RDRFADWPVN VEVMSRFKSA KEVESAARQL AEGKIDILIG THKLLQEDVR
FANLGLVIID EEHRFGVRQK EQLKALRSEV DILTLTATPI PRTLNMAVSG MRDLSIIATP
PARRLSVRTF VMEQQNAVIK EALLRELLRG GQVYYLHNEV KTIEKCARDL AELVPEARIG
IGHGQMHERE LEQVMSDFYH KRFNVLVAST IIETGIDVPS ANTILIERAD KFGLAQLHQL
RGRVGRSHHQ AYAYLLTPPR RQMTPDAEKR LEAIANAQDL GAGFVLATHD LEIRGAGELL
GDGQSGQIQA VGFTLYMEML ERAVKAIRKG EQPNLEQPLG GGPEVNLRVP ALIPEDYLPD
VHARLILYKR IANAADEDGL RELQVEMIDR FGLLPDPAKN LMRLTLLKLQ AEKLGILKVD
AGPQGGRIEF AADTQVDPLV LIKLIQGQPN RYKFEGATLF RFQVPMERPE ERFNTLEALF
ERLAPQTT
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