Gene PSPA7_2028 details

Gene Information

• Locus tag: PSPA7_2028
• Symbol: gspD3
• ID: 5357062
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas aeruginosa PA7
• Kingdom: Bacteria
• Replicon accession: NC_009656
• Strand: -
• Start bp: 2067485
• End bp: 2069461
• Gene Length: 1977 bp
• Protein Length: 658 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 640811081
• Product: general secretion pathway protein D
• Protein accession: YP_001347404
• Protein GI: 152985006
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1450] Type II secretory pathway, component PulD
• TIGRFAM ID: [TIGR02517] general secretion pathway protein D

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.547904
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCCAGC CTTTGTTCCG CGCCCTGCTT GCCCCCTCCA GTCGTTCGTA CGTCCCTGCC 
ATCCTTCTCA GCCTGGCCCT CGGCATCCAG GCCGCGCACG CCGAAGACAG CGGCAGGAAC 
GCCGTCGCCC CCGCCGGCAA CCAGCAGGAG GCGCACTGGA CGATCAACCT CAAGGATGCC 
GACATCCGCG AATTCATCGA CCAGATTTCC GAGATCACCG GCGAGACCTT CGTCGTCGAC 
CCGCGGGTCA AGGGCCAGGT CAGCGTGGTG TCCAAGGCCC AGCTATCGCT GAGCGAGGTC 
TACCAGCTGT TCCTCTCGGT GATGAGCACC CACGGCTTCA CCGTGGTGGC CCAGGGTGAC 
CAGGCGCGCA TCGTGCCCAA CGCCGAAGCC AAGACCGAGG CCGGCGGCGG CCAGAGCGCA 
CCGGACCGCC TGGAGACCCG GGTGATCCAG GTCCAGCAGA GCCCGGTGTC GGAACTGATC 
CCGCTGATCC GCCCGCTGGT CCCGCAGTAT GGGCACCTCG CCGCGGTGCC CTCGGCCAAC 
GCGCTGATCA TCAGCGACCG CAGCGCCAAC ATCGCGCGGA TCGAGGACGT GATCCGCCAG 
CTCGACCAGA AGGGCAGCCA CGACTACAGC GTGATCAACC TGCGCCACGG CTGGGTGATG 
GACGCCGCCG AGGTACTCAA CAGCGCCATG AGCCGCGGCC AGGCCAAGGG CGCGGCCGGC 
GCTCAGGTGA TCGCCGACGC GCGCACCAAC CGCCTGATCA TCCTCGGCCC GCCGCAGGCG 
CGCGCCAAGC TGGTGCAACT GGCGCAGTCG CTGGATACGC CGACCGCGCG CTCGGCCAAT 
ACCCGGGTGA TCCGCCTGCG CCACAACGAT GCCAAGACCC TGGCGGAAAC GCTCGGGCAG 
ATTTCCGAAG GCATGAAGAA CAACGGCGGC CAGGGCGGCG AGCAGAGCGG TGGCGGCCGT 
CCGAGCAATA TCCTGATCCG CGCCGACGAA AGCACCAACG CCCTGGTCCT GCTGGCCGAC 
CCGGACACCG TCAACGCCCT CGAGGACATC GTCCGCCAGC TCGACGTGCC GCGCGCCCAG 
GTGCTGGTGG AAGCGGCCAT CGTCGAGATT TCCGGCGACA TCCAGGACGC CGTCGGCGTG 
CAGTGGGCGA TCAACAAGGG TGGCATGGGT GGAACCAGGA CCAGCTTCGG CAATACCGGA 
CTGTCCATCG GCACCCTGCT GCAGGCGCTC AAGGATGACA AGATTCCCAA CCCGCTCCCC 
GACGGCGCCG TCGTCGGCAT CGGCAGCAGC AGCTTCGGCG CGCTGGTCAC CGCGCTGTCG 
GCCAACAGCA AGAGCAACCT GTTGTCGACC CCGAGCCTGC TGACCCTGGA CAACCAGAAG 
GCGGAAATCC TGGTCGGCCA GAACGTCCCT TTCAATACCG GCTCCTACAC CACCAACAGC 
GAAGGCTCCA GCAACCCGTT CACCACCGTC GAGCGCAAGG ACATCGGCGT CAACCTCAAG 
GTCACCCCGC ATATCAACGA TGGCGCCGCG CTGCGTCTGG AAATCGAGCA GGAAATTTCC 
TCCATCGCGC CGAATGTGCA ACAGGTCAGC GACACCGATA TCATCACCAA CAAGCGCTCG 
ATCAAGAGCA CCATCCTCGC CGAGAACGGC CAGGTCATCG TGCTCGGCGG CCTGATCCAG 
GACGACGTGG TGCAGGCCGA ATCCAAGGTC CCGCTGCTTG GCGACATCCC CTGGCTGGGC 
AGGTTGTTCC GCTCGACCAA GGACACTCAC ACCAAGCGCA ACCTGATGGT CTTCCTGCGC 
CCCACCGTGG TCCTCGACGG AGCGGGCCTG GCGGCGATTT CCGGGAAAAA GTACAGCGAC 
ATCCGCGTGC TCGACGGACG CCGGGGTCCC GAAGGCCGCC CGAGCATCCT GCCGAGCAGC 
GCCGGGCAAT TGTTCGATGG GCAGACCGTG GATCTTCGCG ACCTGAAATC GGAGTGA 

 

Protein sequence

MSQPLFRALL APSSRSYVPA ILLSLALGIQ AAHAEDSGRN AVAPAGNQQE AHWTINLKDA 
DIREFIDQIS EITGETFVVD PRVKGQVSVV SKAQLSLSEV YQLFLSVMST HGFTVVAQGD 
QARIVPNAEA KTEAGGGQSA PDRLETRVIQ VQQSPVSELI PLIRPLVPQY GHLAAVPSAN 
ALIISDRSAN IARIEDVIRQ LDQKGSHDYS VINLRHGWVM DAAEVLNSAM SRGQAKGAAG 
AQVIADARTN RLIILGPPQA RAKLVQLAQS LDTPTARSAN TRVIRLRHND AKTLAETLGQ 
ISEGMKNNGG QGGEQSGGGR PSNILIRADE STNALVLLAD PDTVNALEDI VRQLDVPRAQ 
VLVEAAIVEI SGDIQDAVGV QWAINKGGMG GTRTSFGNTG LSIGTLLQAL KDDKIPNPLP 
DGAVVGIGSS SFGALVTALS ANSKSNLLST PSLLTLDNQK AEILVGQNVP FNTGSYTTNS 
EGSSNPFTTV ERKDIGVNLK VTPHINDGAA LRLEIEQEIS SIAPNVQQVS DTDIITNKRS 
IKSTILAENG QVIVLGGLIQ DDVVQAESKV PLLGDIPWLG RLFRSTKDTH TKRNLMVFLR 
PTVVLDGAGL AAISGKKYSD IRVLDGRRGP EGRPSILPSS AGQLFDGQTV DLRDLKSE