| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_1571 |
|---|
| Symbol | |
|---|
| ID | 5353943 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | + |
|---|
| Start bp | 1596526 |
|---|
| End bp | 1597704 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640810624 |
|---|
| Product | MFS family transporter |
|---|
| Protein accession | YP_001346955 |
|---|
| Protein GI | 152988761 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTGC GCATCCTGCT GATACTGGGA GCCTTGAGCG CCTTCGGGCC ACTGGCCATC
GACTTCTACC TGCCGAGCTT CCCGACCCTG GCCAAGGCCT TCGCCACCGA CGTCGAGCAC
GTCCAACTGA GCCTGGCCGC CTACTTCGCC GGCCTGTCCA TCGGCCAACT GCTCTATGGC
CCGGTGGCCG ACCGCTATGG CCGGCGCCTG CCGCTGCTGG TGGGAGTGAG CATCTTCACC
CTGGCCTCGG CCGCCTGCGC CCTGGCGCCG AGCCTGGAAT GGCTGATCGC CGCGCGTTTC
GTCCAGGCCC TCGGCGGCTG CGCCGGGATG GTCATCTCGC GGGCGGTGGT GCGCGACCTG
TGCGACCCGA TCGGCGCCGC CAAGGCGTTT TCCCAGTTGA TGCTGGTGAT GGGCCTGGCG
CCGATCCTCG CGCCGGTGGC CGGCGGCCTG CTGCTCGACT GGCACGGCTG GCAGTCGATC
TTCGTCTGCC TGACCCTGTT CGCCGCCCTG GCCGGCCTCG GCGTGGCGCT GTGGCTGCCG
GAAACCATCC CCGCCGACGG CGAGCGTCCA CCGCTGTCCG GCGCGCTGGG GCAGTACCGG
CGGCTGTTCG CCGACCGCCT GTTCCTCGCC TACGGTCTCT CCGGTGGAGT GGCGATGGCC
GGGATGTTCG CCTACATCGC CGGTTCGCCC TACGTATTCA TCCAGCTCTA CGGGGTTCCC
GCCGAGCATT ATGGCTGGCT GTTCGGCAGC AACGCCGCGG GCTTCATCGT CATGGCGCAG
GTCAACGCGC GGCTGCTGCG CTATCGCGGG CCGGCGTTCT GGCTGCGGCG GATCATCTGG
GGCTACCTGG CGTGCGGCCT GGCGCTGCTG GGCATCGCCT CGCTGCAACC GGCTACGCTG
TGGCCGCTGC TGGTTCCGCT GTTCGGGTGC GTGGCCAGCC TCGGTTGTAT CATTCCCAAC
GCCTCCGCCT GCGCGATGGC CGGGCAGGGA CAGCACGCCG GCAGCGCCTC GGCGCTGATG
GGCAGTCTGC AGTTCAGCGT GGCGGCGGGC GCTTCGGCGC TGGTCGGCGT GCTCCACGAC
GGCACGGCGA TCCCCATGAC TCTGGTGATC GCCGTCTGCG GCGCGGTCGC CACCCTGCTC
GCCTGGCAGT CCGGGCGCCT GGAGCGCCAG GCCGCCTGA
|
|---|
| Protein sequence | MNLRILLILG ALSAFGPLAI DFYLPSFPTL AKAFATDVEH VQLSLAAYFA GLSIGQLLYG
PVADRYGRRL PLLVGVSIFT LASAACALAP SLEWLIAARF VQALGGCAGM VISRAVVRDL
CDPIGAAKAF SQLMLVMGLA PILAPVAGGL LLDWHGWQSI FVCLTLFAAL AGLGVALWLP
ETIPADGERP PLSGALGQYR RLFADRLFLA YGLSGGVAMA GMFAYIAGSP YVFIQLYGVP
AEHYGWLFGS NAAGFIVMAQ VNARLLRYRG PAFWLRRIIW GYLACGLALL GIASLQPATL
WPLLVPLFGC VASLGCIIPN ASACAMAGQG QHAGSASALM GSLQFSVAAG ASALVGVLHD
GTAIPMTLVI AVCGAVATLL AWQSGRLERQ AA
|
|---|
| |