Gene PSPA7_1416 details

Gene Information

• Locus tag: PSPA7_1416
• Symbol: gspD4
• ID: 5355779
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas aeruginosa PA7
• Kingdom: Bacteria
• Replicon accession: NC_009656
• Strand: -
• Start bp: 1431623
• End bp: 1433527
• Gene Length: 1905 bp
• Protein Length: 634 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 640810469
• Product: general secretion pathway protein D
• Protein accession: YP_001346800
• Protein GI: 152989153
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1450] Type II secretory pathway, component PulD
• TIGRFAM ID: [TIGR02517] general secretion pathway protein D

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.67015
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACTGA CCCGCCTCAC CCGGGCGCTG CTGATGCTCG GCACCCTGTC TTTCCCCCTG 
GCGTCCCAGG CCAACGACCC GGACGGCCGC CTGTGGACCC TCAACATGAA GGACGCGGAG 
CTGCGCGACC TGGTCAGCGA GGTCGGTGAA ATCACCGGCA AGACCATGGT CCTGGACCCG 
CGCCTGAGCG GCAAGGTGAC GGTGCAGTCG ACCTCCGCCA TGGACCAGGA AGGCATCTAC 
TCGCTGTTCC TCAGCGTCCT GCGCAGCCAG GGCTTCGCCG CCCTAGACCA GGGCGACCGG 
GTGCTGATCG TGCCGGTCGC CGAGGCCAAG ACCAAGGCCA GCCGGCACCG CGACAACGCC 
AGCGAGGCCT TCGTCACCGA GGTCCTGGCA CTGGACAACG CCACCGCCAG CGAGGTGTCC 
GCGGTGGTCC GCCCGCTGGT GGCCAACGAC GCCTACGTCG CACCGTCGGC CAGCTCCAAC 
GCCCTGGTGG TGACCGACAG CGCCAACAAT GTCGAGCGCA TCCGCCAGGT GGTGCGCGAA 
CTCGACGGCG CCGGGCACAA GTCCTTCACC ACGCTGAAGC TCGAGCACGC CTGGGCCACC 
GAAGTGGCCA GGACCCTCAC GGAAAGCGTG AGCCAGAACG GCGGCGGCCC CAACGCCGCG 
AAGGCCATCG GCGACGCCCG CAGCAACCGG CTGATCCTGG TCGGGCCGAC GTCGCTGCGC 
GAGCAGATGG CACGCCTGGC GCGCGCGCTC GACGTGCCCG GCGACGCCAA CGCCAGCACC 
CGCGTGGTGC GTCTGCACCA TAGCGATGCC AAGCAACTGG AAGAACTGCT CAATGGCATC 
GGCAAGCGCA TGGAGAACGG CGCCCGCGGC GGCAAGGACG GCGGCGCCCA GGGCAGTCCG 
ATCATGATCA GCGCCGATAC CAGCCAGAAC GCCCTGGTGC TGATGGCCGA GCCGGCGCAA 
CTGGCGATGC TCGACAACGT CATCGCCCAG CTCGACCGGC CACGCGCCCA GGTGCTGGTG 
GAGGCGGCGA TCGTCGAAGT CAGCGGCGAC ATCAACGAAG CCCTCGGCGT GCAGTGGGCC 
GCCCGCGCCG GCGACGTCGC CGGCGGCACC AGCTTCGGCA ACGGCGGCCT GACCATCGGC 
AGCCTGCTCA ACCAGGAAGC CGGCAAGCGC CCGAACCTGC CCGACGGCGC GATCATCGGC 
ATCGGCAGTC GCAATTTCGG CGCGCTGGTC ACGGCGCTGT CCAGCGACTC CAACAACAAC 
CTGCTGTCGA CCCCGAGCCT GCTGACGCTG GACAACGAGG CCGCGGAGAT CCTGGTCGGC 
CAGAACGTAC CGTTCCAGAC CGGCTCCTAC ACCACCGACA GCGCCGGCGC CAGCAACCCG 
TTCACCACCG TGGAGCGCAA GGACGTCGGC ATCACCCTCA AGGTGACCCC GCACATCAAC 
GAGGGCGACA CCCTGCGCCT GAAGGTGGAA CAGGAGAGCT CCGAGCTGGC CAGCGCTCCG 
GCCGGCATCT CCACCAGCGA CGTGATCACC AACAAACGTT CGGTGAAGAG CACCATCCTC 
GCCGACGACG GGCAGATCAT CGTCATCGGC GGCCTGATCA AGGACAACGT CAAGACCCAG 
GTCAGCAAGG TCCCGCTGCT CGGCAGCATC CCGCTGCTCG GCCGGCTGTT CCGCAGCACC 
AAGGACGTCA ACGAGAAGAC CAACCTGATG GTCTTCCTGC GTCCGACCCT GCTGCGCAAT 
ACCGCCAACG CCGACAGCCT CAGCCAGCGC AAGTATGACG GCCTGCGCCA GCTGCGCCCG 
GCCGCCGGCG GCGCCAACGG CCTGTTGCTG CCCGAGGATC CGCGCCGGCT GTTCGACGGC 
GCCGGGGACA AGGTGGTCGA CATGCGCAAG GGAGCCCGTC GGTGA 

 

Protein sequence

MKLTRLTRAL LMLGTLSFPL ASQANDPDGR LWTLNMKDAE LRDLVSEVGE ITGKTMVLDP 
RLSGKVTVQS TSAMDQEGIY SLFLSVLRSQ GFAALDQGDR VLIVPVAEAK TKASRHRDNA 
SEAFVTEVLA LDNATASEVS AVVRPLVAND AYVAPSASSN ALVVTDSANN VERIRQVVRE 
LDGAGHKSFT TLKLEHAWAT EVARTLTESV SQNGGGPNAA KAIGDARSNR LILVGPTSLR 
EQMARLARAL DVPGDANAST RVVRLHHSDA KQLEELLNGI GKRMENGARG GKDGGAQGSP 
IMISADTSQN ALVLMAEPAQ LAMLDNVIAQ LDRPRAQVLV EAAIVEVSGD INEALGVQWA 
ARAGDVAGGT SFGNGGLTIG SLLNQEAGKR PNLPDGAIIG IGSRNFGALV TALSSDSNNN 
LLSTPSLLTL DNEAAEILVG QNVPFQTGSY TTDSAGASNP FTTVERKDVG ITLKVTPHIN 
EGDTLRLKVE QESSELASAP AGISTSDVIT NKRSVKSTIL ADDGQIIVIG GLIKDNVKTQ 
VSKVPLLGSI PLLGRLFRST KDVNEKTNLM VFLRPTLLRN TANADSLSQR KYDGLRQLRP 
AAGGANGLLL PEDPRRLFDG AGDKVVDMRK GARR