| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_1247 |
|---|
| Symbol | |
|---|
| ID | 5359205 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | + |
|---|
| Start bp | 1259341 |
|---|
| End bp | 1259859 |
|---|
| Gene Length | 519 bp |
|---|
| Protein Length | 172 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640810300 |
|---|
| Product | secreted protein Hcp |
|---|
| Protein accession | YP_001346632 |
|---|
| Protein GI | 152989635 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
|---|
| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.129436 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACAC CCGCCTATAT GTCCATCACC GGCACCAAGC AGGGCCTGAT CACTGCCGGC
GCCTTCACCG AGGACTCGGT CGGCAACACC TACCAGGAGG GCCATGAGGA CCAGGTGATG
GTCCAGGGCT TCAACCACGA GGTGATCATC CCTCGTGACC CGCAGTCCGG CCAGCCGACC
GGCCAGCGCG TGCACAAGCC GGTGGTCATC ACCAAGGTCT TCGACAAGGC CTCGCCGCTG
CTGCTCGCCG CGCTGACCTC GGGCGAGCGC CTGACCAAGG TCGAGATCCA GTGGTTCCGC
ACCTCCGCCG CCGGCACCCA GGAACACTAC TACACCACCG TCCTGGAAGA CGCGATCATC
GTCGACATCA AGGACTACAT GCACAACTGC CAGGACCCGG GCAACGCCCA TTTCACCCAC
CTGGAGGACG TGCATTTCAC CTACCGCAAG ATCACCTGGA CCCACGAAGT CTCCGGCACC
TCCGGTTCCG ACGATTGGCG CTCGCCGGTC GCCGGCTGA
|
|---|
| Protein sequence | MATPAYMSIT GTKQGLITAG AFTEDSVGNT YQEGHEDQVM VQGFNHEVII PRDPQSGQPT
GQRVHKPVVI TKVFDKASPL LLAALTSGER LTKVEIQWFR TSAAGTQEHY YTTVLEDAII
VDIKDYMHNC QDPGNAHFTH LEDVHFTYRK ITWTHEVSGT SGSDDWRSPV AG
|
|---|
| |