| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_0830 |
|---|
| Symbol | rpoB |
|---|
| ID | 5357348 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | + |
|---|
| Start bp | 820201 |
|---|
| End bp | 824274 |
|---|
| Gene Length | 4074 bp |
|---|
| Protein Length | 1357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640809884 |
|---|
| Product | DNA-directed RNA polymerase subunit beta |
|---|
| Protein accession | YP_001346216 |
|---|
| Protein GI | 152984487 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
|---|
| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.435118 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTACT CATACACTGA GAAAAAACGT ATCCGCAAGG ACTTTAGCAA GTTGCCGGAC
GTCATGGATG TGCCGTATTT GCTGGCCATC CAGCTGGATT CCTATCGCGA ATTCCTGCAG
GCTGGCGCAA CCAAGGAGCA GTTCCGCGAT ATCGGTCTGC ACGCGGCCTT CAAGTCCGTT
TTCCCGATTA TCAGCTATTC CGGCAATGCT GCCCTGGAAT ACGTCGGCTA CCGTCTGGGT
GAGCCGGCAT TCGATGTCAA GGAGTGCGTG CTGCGCGGCG TGACCTTCGC CGTACCGCTG
CGCGTGAAAG TCCGCCTGAT CATCTTCGAC CGCGAGTCGT CGAACAAGGC GATCAAGGAC
ATCAAGGAAC AAGAAGTCTA CATGGGGGAA ATCCCCCTGA TGACCGAGAA CGGTACCTTC
ATCATCAACG GTACCGAGCG CGTCATCGTC TCCCAGCTGC ACCGTTCCCC GGGTGTGTTC
TTCGACCACG ACCGTGGCAA GACCCACAGC TCCGGCAAGC TGCTGTACTC CGCGCGGATC
ATTCCTTACC GCGGCTCCTG GCTGGACTTC GAGTTCGACC CGAAGGACTG CGTGTTCGTC
CGTATCGACC GTCGCCGCAA GCTGCCGGCC TCGGTACTGC TGCGCGCGCT CGGTTACAGC
ACCGAAGAGA TCCTCAACGC CTTCTACGCG ACCAACGTCT TCCACATCAA GGGCGAGACC
CTGAACCTGG AGCTGGTCCC GCAGCGCCTG CGCGGTGAAG TCGCGAGCAT CGACATCAAG
GACGGCAGCG GCAAGGTCAT CGTGGAGCAG GGTCGCCGTA TCACCGCCCG CCACATCAAC
CAGCTGGAAA AGGCTGGCGT GACCCAGCTG GAAGTGCCGT TCGACTACCT GATCGGCCGT
ACCATCGCCA AGGCGATCGT GCATCCGGCC ACCGGCGAGA TCATCGCCGA ATGCAACACC
GAGCTGACCC TCGACCTCCT GGCCAAGGTG GCCAAGGCTC AGGTCGTGCG CATCGAGACG
CTGTACACCA ATGACATCGA CTGCGGTCCG TTCATCTCCG ATACCCTGAA GATCGACAAC
ACCAGCAATC AGCTGGAAGC CCTGGTCGAG ATCTACCGGA TGATGCGTCC GGGCGAGCCG
CCGACCAAGG AAGCCGCCGA GACCCTGTTC GGCAACCTGT TCTTCAGCGC CGAGCGTTAC
GACCTGTCGG CCGTGGGCCG GATGAAGTTC AACCGTCGTA TCGGTCGTAC CGAGATCGAA
GGTCCGGGCG TCCTGAGCAA GGAAGACATC ATCGATGTGC TCAAGACCCT GGTCGACATC
CGTAACGGCA AGGGCATCGT CGATGACATC GACCACCTGG GCAACCGCCG TGTCCGTTGC
GTCGGCGAGA TGGCCGAGAA CCAGTTCCGC GTGGGCCTGG TGCGTGTCGA GCGCGCGGTC
AAGGAACGCC TGTCGATGGC TGAAAGCGAA GGCCTGATGC CGCAGGACCT GATCAACGCC
AAGCCGGTGG CTGCCGCGAT CAAGGAGTTC TTCGGTTCGA GCCAGCTGTC GCAGTTCATG
GACCAGAACA ACCCGCTCTC CGAGATCACC CACAAGCGCC GCGTCTCCGC GCTCGGCCCG
GGCGGTCTGA CCCGAGAGCG TGCGGGCTTC GAGGTTCGTG ACGTACACCC GACCCACTAC
GGTCGCGTGT GCCCGATCGA AACCCCTGAA GGTCCGAACA TCGGTCTGAT CAACTCCCTG
GCGACCTACG CCCGCACCAA CAAGTACGGC TTCCTCGAGA GCCCGTACCG CGTGGTCAAG
GACAGCCTGG TAACCGACGA GATCGTGTTC CTGTCGGCGA TCGAAGAAGC CGATCACGTC
ATCGCCCAGG CTTCGGCGAC CCTCAACGAG AAGGGCCAAC TGGTGGACGA GCTGGTGGCC
GTGCGTCACC TGAACGAATT CACCGTGAAG GCGCCGGAAG ACGTGACCCT GATGGACGTT
TCGCCGAAGC AGGTCGTTTC CGTCGCTGCC TCGCTGATTC CGTTCCTCGA GCACGACGAC
GCCAACCGCG CACTCATGGG CTCGAACATG CAGCGTCAGG CCGTGCCGAC CCTGCGTGCC
GACAAGCCGC TGGTGGGCAC CGGCATGGAG CGCAACGTGG CGCGCGACTC CGGCGTCTGC
GTCGTGGCTC GCCGTGGCGG GGTGATCGAC TCGGTCGATG CCAGCCGTGT CGTGGTTCGC
GTGGCGGATG ACGAGGTCGA GACCGGCGAA GCGGGTGTCG ACATCTACAA CCTGACCAAG
TACACCCGTT CCAACCAGAA CACTTGCATC AACCAGCGTC CGCTGGTGAG CAAGGGTGAC
GTGGTCGCGC GCGGCGACAT CCTGGCCGAC GGTCCGTCCA CCGACATGGG CGAACTGGCC
CTGGGCCAGA ACATGCGCGT AGCGTTCATG CCCTGGAACG GCTTCAACTT CGAAGACTCC
ATCTGCCTGT CCGAGCGTGT GGTCCAGGAA GATCGCTTCA CCACGATCCA CATCCAGGAG
CTGACCTGCG TCGCTCGCGA CACCAAGCTC GGCCCAGAGG AAATCACCGC GGACATCCCG
AACGTGGGCG AGGCTGCGCT GAACAAGCTG GACGAGGCCG GTATCGTCTA CGTCGGCGCC
GAAGTGCAGG CCGGCGACAT CCTGGTCGGC AAGGTCACTC CGAAAGGCGA GACCCAGCTG
ACTCCTGAAG AGAAGCTGCT GCGCGCGATC TTCGGTGAGA AGGCGTCCGA CGTGAAGGAT
ACTTCCCTGC GTGTGCCGAC CGGCACCAAG GGCACCGTGA TCGACGTACA GGTCTTCACC
CGCGATGGCG TCGAGCGCGA TTCCCGCGCG CTGTCCATCG AGAAGATGCA GCTCGACCAG
ATCCGCAAGG ACCTGAACGA AGAGTTCCGC ATCGTCGAAG GCGCGACCTT CGAGCGTCTG
CGTGCCGCCC TGGTCGGTGC CAAGGCCGAA GGCGGCCCGG CGCTGAAGAA GGGCACGGAG
ATCACCGACG ACTACCTGGA CGGCCTCGAG CGCGGCCAGT GGTTCAAGCT GCGCATGGCC
GACGATGCCC TTAACGAGCA GCTGGAGAAG GCCCAGGCCT ACATCAGCGA TCGTCGTCAG
CTCCTGGACG ACAAGTTCGA GGACAAGAAG CGCAAGCTGC AGCAGGGCGA CGACCTGGCT
CCGGGCGTGC TGAAGATCGT CAAGGTCTAC CTGGCGATCA AGCGTCGCAT CCAGCCGGGC
GACAAGATGG CCGGCCGTCA CGGTAACAAG GGTGTGGTCT CGGTGATCAT GCCGGTGGAA
GACATGCCGC ACGATGCCAA CGGCACCCCG GTCGACATCG TCCTCAACCC GCTGGGCGTA
CCGTCGCGTA TGAACGTCGG CCAGATCCTC GAAACCCACC TGGGCCTCGC GGCCAAGGGG
CTGGGCGAGA AGATCAACCG CATGCTCGAA GAGCAGCGCA AGGTCGCCGA GCTGCGCAAG
TTCCTGCACG AGATCTACAA CGAGATCGGC GGTCGCGAGG AAAACCTCGA CGAGCTGGGC
GACAACGAGA TCCTCGCGCT GGCCAAGAAC CTGCGCGGTG GCGTACCGAT GGCGACCCCG
GTGTTCGATG GCGCCAAGGA ACGCGAGATC AAGGCCATGC TGAAGCTGGC CGACCTGCCG
GAAAGCGGCC AGATGCGTCT GTTCGACGGT CGTACCGGCA ACCAGTTCGA GCGTCCGACC
ACCGTCGGCT ACATGTACAT GCTCAAGCTG AACCACCTGG TGGACGACAA GATGCACGCC
CGTTCCACCG GCTCGTACAG CCTGGTTACC CAGCAGCCGC TGGGTGGTAA GGCACAGTTC
GGTGGTCAGC GCTTCGGTGA GATGGAGGTG TGGGCGCTGG AAGCCTATGG CGCGGCGTAC
ACCCTGCAAG AAATGCTGAC GGTCAAGTCG GACGACGTGA ACGGCCGGAC CAAGATGTAC
AAGAACATCG TGGACGGCGA TCACCGCATG GAGGCCGGCA TGCCCGAGTC CTTCAACGTT
CTGATCAAAG AGATTCGTTC GCTCGGCATC GACATCGAAC TGGAAACCGA ATAA
|
|---|
| Protein sequence | MAYSYTEKKR IRKDFSKLPD VMDVPYLLAI QLDSYREFLQ AGATKEQFRD IGLHAAFKSV
FPIISYSGNA ALEYVGYRLG EPAFDVKECV LRGVTFAVPL RVKVRLIIFD RESSNKAIKD
IKEQEVYMGE IPLMTENGTF IINGTERVIV SQLHRSPGVF FDHDRGKTHS SGKLLYSARI
IPYRGSWLDF EFDPKDCVFV RIDRRRKLPA SVLLRALGYS TEEILNAFYA TNVFHIKGET
LNLELVPQRL RGEVASIDIK DGSGKVIVEQ GRRITARHIN QLEKAGVTQL EVPFDYLIGR
TIAKAIVHPA TGEIIAECNT ELTLDLLAKV AKAQVVRIET LYTNDIDCGP FISDTLKIDN
TSNQLEALVE IYRMMRPGEP PTKEAAETLF GNLFFSAERY DLSAVGRMKF NRRIGRTEIE
GPGVLSKEDI IDVLKTLVDI RNGKGIVDDI DHLGNRRVRC VGEMAENQFR VGLVRVERAV
KERLSMAESE GLMPQDLINA KPVAAAIKEF FGSSQLSQFM DQNNPLSEIT HKRRVSALGP
GGLTRERAGF EVRDVHPTHY GRVCPIETPE GPNIGLINSL ATYARTNKYG FLESPYRVVK
DSLVTDEIVF LSAIEEADHV IAQASATLNE KGQLVDELVA VRHLNEFTVK APEDVTLMDV
SPKQVVSVAA SLIPFLEHDD ANRALMGSNM QRQAVPTLRA DKPLVGTGME RNVARDSGVC
VVARRGGVID SVDASRVVVR VADDEVETGE AGVDIYNLTK YTRSNQNTCI NQRPLVSKGD
VVARGDILAD GPSTDMGELA LGQNMRVAFM PWNGFNFEDS ICLSERVVQE DRFTTIHIQE
LTCVARDTKL GPEEITADIP NVGEAALNKL DEAGIVYVGA EVQAGDILVG KVTPKGETQL
TPEEKLLRAI FGEKASDVKD TSLRVPTGTK GTVIDVQVFT RDGVERDSRA LSIEKMQLDQ
IRKDLNEEFR IVEGATFERL RAALVGAKAE GGPALKKGTE ITDDYLDGLE RGQWFKLRMA
DDALNEQLEK AQAYISDRRQ LLDDKFEDKK RKLQQGDDLA PGVLKIVKVY LAIKRRIQPG
DKMAGRHGNK GVVSVIMPVE DMPHDANGTP VDIVLNPLGV PSRMNVGQIL ETHLGLAAKG
LGEKINRMLE EQRKVAELRK FLHEIYNEIG GREENLDELG DNEILALAKN LRGGVPMATP
VFDGAKEREI KAMLKLADLP ESGQMRLFDG RTGNQFERPT TVGYMYMLKL NHLVDDKMHA
RSTGSYSLVT QQPLGGKAQF GGQRFGEMEV WALEAYGAAY TLQEMLTVKS DDVNGRTKMY
KNIVDGDHRM EAGMPESFNV LIKEIRSLGI DIELETE
|
|---|
| |