| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_0148 |
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| Symbol | |
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| ID | 5354223 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa PA7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009656 |
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| Strand | - |
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| Start bp | 161170 |
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| End bp | 164700 |
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| Gene Length | 3531 bp |
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| Protein Length | 1176 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640809202 |
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| Product | hypothetical protein |
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| Protein accession | YP_001345544 |
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| Protein GI | 152984454 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.201488 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGGCT TCCTCAACTT CTTCACGCGC TGGGTGGTGC CGGTGCTCGG CCTGCTCGCT
CTGAGCCTGG TCATCTGGTT CCTCGGCCCG CTGCTGCGCC TGGGCAACTA CGAGCCGCTG
GCCTCGGCGA CCAGCCGCTG GGTGCTGATC GCCCTGCTGT TCCTGGTCTG GATCGGCTTC
CGCGTGCTGC GCATCGTGCA GGCCCGGCGC AACGCGGCGA AGGTCATGCA GAGTCTCGCC
GAGGTCAGCG CGCCGGACGC CGCCAGCGTC GCCACCGCCG AAGAGCTGGC GACCCTCAAG
CAACGCATGG ACGAGGCCCT GGCCCTGCTC AAGCGGGCCA AGCTGGGCGG CAGCGAGCGG
CGCAACCTGT ACGAGCTGCC CTGGTACGTG ATCATCGGCC CGCCCGGTTC GGGCAAGACC
ACCGCGCTGA TGAACTCCGG CCTGGACTTC CCGCTCGCCG CGCAGATGGG CGCCGGGGCG
ATCCGCGGGG TCGGCGGCAC GCGCAACTGC GACTGGTGGT TCACCGACGA AGCGGTGCTG
CTGGACACCG CCGGCCGCTA TACCACCCAG GACAGCCACG CCCAGGTGGA CAAGGCCGCC
TGGCTGGGCT TCCTCGACCT GCTCAAGACC CAGCGCAAGC GCCGTCCCAT CGATGGCGCG
TTCATCGCCA TCAGCCTCTC CGACCTGCTG CTGGGCAGCG ACGCCGAGCG CGCCGCCCAC
GCCCAGGCGA TCCGCGCGCG GATCCAGGAG CTGTACCAGC AGCTCGGCGT GCGCTTCCCG
ATCTACGTGA TGCTGACCAA GTTCGACCTG GTGCCGGGCT TCATGGAGTT CTTCGACAGC
CTGAACCGCG AGGAGCGCGC CCAGGTCTGG GGAATGACCT TCGCCCTCGA CGACGGCAAG
AGCGCGGAAG GCCCGCTGGC GGGTTTCGCC AGCGAGTTCG CGCTGCTCGA GCAGCGCCTC
ACCGCGCGCC TGGTCGAGCG CCTGCAGCAG GAACGCGACC CGGCGCGGCG CGACCTGGTC
TACGGCTTCC CGCAGCAGTT CGCCGCCCTG CGCGAGTGCC TCGGCGAGTT CCTCAATGGC
GTGTTCAAGC CCAACCCCTA CGAGGAACGC CCGCTGTTGC GCGGCCTGTA CTTCACCAGC
GGAACCCAGG AAGGCAGCCC GATCGACCGC CTGATCGGCA GCATGGCGCA GTCGATGAAC
CTCGACCGCC AGCACCTGGC GCGGCAGACC GGCACCGGGC GCAGCTACTT CATCGAGCGG
CTGTTCCGCG AAGTGGCGTT CGGCGAGCGC GGGCTGGTCG GCACCAACCC GAAGGTCGAG
CGCCGCCGCA AGTGGCTGAC CATCGGCGCG CTGAGCGCCA CCGCGCTGGT GGTGCTGGCG
GTGACGGCGG TATGGATCGC CAGCTACCGC GCCAACCAGA GCTACATCGC CGCGGTCGAC
CAGCGCGTCG ACCCGCTGGC GCGCGGCATC GAGTCGCTGA GTCCGGCGCA GCGCGACGTG
CTCGCCGTGC TGCCGCAGCT CAACGCGGTG CAGAACCTCG CCAACGACGC GCCGGGCTGG
GCCGAAGGCT ACGGGCTGTA CCAGGGCGAC ATGCTCGGCG AGGAGTCCGC CAGCGTCTAC
CGCAAGCTGC TGATCGCGGT GTTCGCCCCG CGCCTGGTGA CCCGCATCGA GGAACAGCTG
CGCTCCGGCG GCAGCAGCGA CTTCCTCTAC GAGGGCCTGA AGGCCTACCT GATGCTCGGT
AGCCCCGACC ACTACGACGC CGACTTCATC AAGGCCTGGA TCAGCCTCGA CTGGGAACGC
AACCTGCCGC GCGACCTCTC GCCGGAACAG CGCCAGGCGC TGCACGCGCA CCTCGACGCG
TTGCTCGAGC GGCGGCCGCC GTCGGCGCGC CTGGACCAGG ACCTGGTCGA GGACCTGCGC
CGCCAGTTGC AGCAACTGCC GGTGGCGCAG CGGGTCTACG ACCGGGTCAA GCGGCAGAGG
CTGCCCAAGG ACGTGCCCGA CTTCCGCATC AGCGACGCCG CCGGCCGCGA CGCGCCGCTG
GTGTTCGCGC GCAAGAGCGG CAAGCCGCTC ACCGACCCGC TCAGCGGCTT CTTCACCTAC
CGCGGCTACC GCGAGGTGTT CCTCACCGCC AGCCTCAGCC AGGCCGGCAC CATCGCCGAG
GAACAGTGGG TGCTCGGGCG CGACCTGAAC GATGCCGGCG ACGCCGCCAA CCTGGCCCTC
GACGTGCGTC GCCTGTACTT CCAGGACTAC CTGCGGCAGT GGGACGACCT GCTCGCCGAC
CTCACCGTGG TGCCGATCAC CAACGTCACC CAGGCCGCCG ACGTGCTGCG CATCCTTTCC
GGACCGACCT CGCCGTTCCG CAAGCTGCTC GAGGCGGTGG CCCGCGAGAC CGACCTGCAG
AAAGGCGACC GGCTGGTCGC CGCGCAGGTG AAGAAGGCCG CCGACGGCAC CGTGGACAAG
CTCAAGCAGC GCCTCGGCTC GCTGGTCGGC CAGGAAGAGG AGGGCGTCCG CGAACAGCCG
CAACAGGCCG ACAGCGACCC GATCAGCGCG CACTTCGCCG AACTCAACAG CCTGGTCAGC
AAGGGCGAGG GCGGCAACGA GCCAGCGCCG ATCGACAGCC TGCTGGAGGA CATGAACACC
CTCTACGTAC AGGTCAGCGC CATGGCCGGA GCCAGCGGCG ACTCGCTGCT CGGCGACGCC
AAGAACCAGG TGGCCGCCGC CGCCTCGCGC GTGGCCCTGA GCGCCGAGCG CCAGCCGCCG
GTGGTCCAGG GCCTGGTGAA GAAGGTGGTC AACTCCACCA CCAGCAGCAT GATGGGCAGC
GTGCGCAACC AGCTCAACGC GGCGTGGATC AGCGACGTGG TCAGCGTCTA CCGGCAATCC
CTGGCCGGGC GCTACCCGAT CGCCGCCGGC AGCTCGCGCG ACGCCACCCT GGAGGACTTC
GGCCACTTCT TCGGGGCCGG CGGGGTGATG GACAGCTACT TCCGCCAGTA CCTGCAACCC
TACGTCGACA CCTCCGCCAG CACCTGGCGC TGGCAGCCCG GCGCGGCGCA GAAGCTCGGC
ATCAACCCCG GCGTGCTGCA CACCTTCCAG CGCGCGGCGG CGATCCGCGA CGCCTTCTTC
CGCTCCGGCG GCATGCAACC GACGGTGCGC TTCGAGCTCA AGCCGGTGAC CATGGACGCG
GCGATCAGCC AGTTCATCCT CGACCTCGAC GGCCAGCAAC TGACCTACGA CCACGGCCCG
AGCCGCCCGG TGGCGATGCA GTGGCCGAGC GCCAACGGCC TCGGCGTGGT CCGCCTGACC
GTGACGCCGG CGCCCAGCAG CGGCCGCTCC GGGCTGACCC TGGAAGGCCC CTGGGCCTGG
TTCCGCCTGC TCGACCAGTC GGACCTGGAG CGCGGCAACT CGCCGGACCG CTTCACCCTG
CGGCTGCGCA TCGACGGCTC CAGCATCGCC TGCGAACTGC GCGCCAGCAG CGCCTTCAAC
CCCTTCAAGA GCCGGGTCGT GTCCGGTTTC AGCCTCCCGG AGCGCCTTTG A
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| Protein sequence | MKGFLNFFTR WVVPVLGLLA LSLVIWFLGP LLRLGNYEPL ASATSRWVLI ALLFLVWIGF
RVLRIVQARR NAAKVMQSLA EVSAPDAASV ATAEELATLK QRMDEALALL KRAKLGGSER
RNLYELPWYV IIGPPGSGKT TALMNSGLDF PLAAQMGAGA IRGVGGTRNC DWWFTDEAVL
LDTAGRYTTQ DSHAQVDKAA WLGFLDLLKT QRKRRPIDGA FIAISLSDLL LGSDAERAAH
AQAIRARIQE LYQQLGVRFP IYVMLTKFDL VPGFMEFFDS LNREERAQVW GMTFALDDGK
SAEGPLAGFA SEFALLEQRL TARLVERLQQ ERDPARRDLV YGFPQQFAAL RECLGEFLNG
VFKPNPYEER PLLRGLYFTS GTQEGSPIDR LIGSMAQSMN LDRQHLARQT GTGRSYFIER
LFREVAFGER GLVGTNPKVE RRRKWLTIGA LSATALVVLA VTAVWIASYR ANQSYIAAVD
QRVDPLARGI ESLSPAQRDV LAVLPQLNAV QNLANDAPGW AEGYGLYQGD MLGEESASVY
RKLLIAVFAP RLVTRIEEQL RSGGSSDFLY EGLKAYLMLG SPDHYDADFI KAWISLDWER
NLPRDLSPEQ RQALHAHLDA LLERRPPSAR LDQDLVEDLR RQLQQLPVAQ RVYDRVKRQR
LPKDVPDFRI SDAAGRDAPL VFARKSGKPL TDPLSGFFTY RGYREVFLTA SLSQAGTIAE
EQWVLGRDLN DAGDAANLAL DVRRLYFQDY LRQWDDLLAD LTVVPITNVT QAADVLRILS
GPTSPFRKLL EAVARETDLQ KGDRLVAAQV KKAADGTVDK LKQRLGSLVG QEEEGVREQP
QQADSDPISA HFAELNSLVS KGEGGNEPAP IDSLLEDMNT LYVQVSAMAG ASGDSLLGDA
KNQVAAAASR VALSAERQPP VVQGLVKKVV NSTTSSMMGS VRNQLNAAWI SDVVSVYRQS
LAGRYPIAAG SSRDATLEDF GHFFGAGGVM DSYFRQYLQP YVDTSASTWR WQPGAAQKLG
INPGVLHTFQ RAAAIRDAFF RSGGMQPTVR FELKPVTMDA AISQFILDLD GQQLTYDHGP
SRPVAMQWPS ANGLGVVRLT VTPAPSSGRS GLTLEGPWAW FRLLDQSDLE RGNSPDRFTL
RLRIDGSSIA CELRASSAFN PFKSRVVSGF SLPERL
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