| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmwyl1_1876 |
|---|
| Symbol | |
|---|
| ID | 5367302 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinomonas sp. MWYL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009654 |
|---|
| Strand | - |
|---|
| Start bp | 2124544 |
|---|
| End bp | 2125863 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640804223 |
|---|
| Product | xylose isomerase |
|---|
| Protein accession | YP_001340735 |
|---|
| Protein GI | 152995900 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2115] Xylose isomerase |
|---|
| TIGRFAM ID | [TIGR02630] xylose isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.554303 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAT TTTTCAAAAC TGTGCCGGTT GTCAAATACG AAGGTGCGGA TTCAAGCAAC
CCTTTTGCTT TCAAACATTA CGATGCGAAC AAGATGCTGA TGGGCAAAAC CATGGCGGAG
CATTTACGGG TGGCAGTGTG TTATTGGCAC ACGTTCTGTT GGCAAGGTAG CGATGTCTTT
GGCGCAAATA CTTTTGATCG CCCTTGGTCT AAAGCTGCAT CTGAAATGGA AGCTGCAAAG
CTAAAAACCG ATGCAGCGTT TGAGTTTTTC ACTAAATTGG GTGTTCCCTA CTACAGCTTT
CACGATGTAG ATGTCAGCCC AGAAGGCCGT TCAATCAAAG AGTACATTAA TAACTTTGCG
CAAATGGTCG ACGTTCTACA AGCCAAGCAA GAAGCTACTG GCATAAAGCT GTTATGGGGA
ACGGCAAATG CCTTTTCCAA TCCAAGGTAC ATGTCTGGCG CTGCGTCAAA CCCTAACCCT
GAAATCTTCG CTTACGCAGC GACTCAGGTG TTTCATGCGA TGAATGCGAC CAAAGCACTT
AAAGGCGAGA ACTATGTTCT ATGGGGCGGC CGTGAAGGCT ATGAAACTCT ATTGAATACC
GATTTAAAAC GCGAACGCGC GCAGCTTGGT CGTTTTATGC AAATGGTGGT TGAGCACAAA
TACAAAATCG GCTTTGAAGG CACCTTGTTG ATCGAGCCAA AACCAGCGGA ACCGACCAAG
CATCAGTACG ATTACGATAC CGCGACAGTA TATGGCTTCT TAAAAGAGTT TGGTCTTGAA
AAAGAGATCA AGGTCAACAT CGAAGCCAAC CACGCGACCT TGGCAGGTCA CAGCTTCCAC
CATGAAATTG CTACGGCTTG TTCCTTGGGC ATTCTTGGTT CCGTCGACGC CAACCAAGGC
GATGCTCAGC TTGGCTGGGA TACAGACCAA TTCCCAACTA GTGTGGAAGA ATACACGCTT
GTTACTTATG AGATTCTAAA ATCTGGTGGT TTCAAAACGG GCGGCTACAT GTTCGATACC
AAGCTACGCC GTCAATCTAT GGATCTGGAA GATTTATTCC ACGGTCACAT TGGTGCGATG
GACACTCTGG CTTTGTCACT AGAACGTGCG GTTAAAATGA TCGAAGATGA AAAATTGGCG
AACATTGTTG ATCAGCGTTA TGCAAAATGG AACGACTCTT TGGGTGCAGA CATTTTGGCT
GGCAAGCACA CATTGCAAGA TCTGGCAGAA TATGCTGAGA AAAATAACAT AGACCCTCAG
CCAGTGTCTG GCCGCCAAGA GATGCTAGAA AACATGGTAA ATGGCTACAT CTTTAAATAA
|
|---|
| Protein sequence | MSEFFKTVPV VKYEGADSSN PFAFKHYDAN KMLMGKTMAE HLRVAVCYWH TFCWQGSDVF
GANTFDRPWS KAASEMEAAK LKTDAAFEFF TKLGVPYYSF HDVDVSPEGR SIKEYINNFA
QMVDVLQAKQ EATGIKLLWG TANAFSNPRY MSGAASNPNP EIFAYAATQV FHAMNATKAL
KGENYVLWGG REGYETLLNT DLKRERAQLG RFMQMVVEHK YKIGFEGTLL IEPKPAEPTK
HQYDYDTATV YGFLKEFGLE KEIKVNIEAN HATLAGHSFH HEIATACSLG ILGSVDANQG
DAQLGWDTDQ FPTSVEEYTL VTYEILKSGG FKTGGYMFDT KLRRQSMDLE DLFHGHIGAM
DTLALSLERA VKMIEDEKLA NIVDQRYAKW NDSLGADILA GKHTLQDLAE YAEKNNIDPQ
PVSGRQEMLE NMVNGYIFK
|
|---|
| |