| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmwyl1_1709 |
|---|
| Symbol | |
|---|
| ID | 5366532 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinomonas sp. MWYL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009654 |
|---|
| Strand | - |
|---|
| Start bp | 1928737 |
|---|
| End bp | 1932150 |
|---|
| Gene Length | 3414 bp |
|---|
| Protein Length | 1137 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640804050 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_001340570 |
|---|
| Protein GI | 152995735 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.517079 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0571023 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGAAA CCGTATCAAT CACACTAAAA CCAGGCTTCA AGAATTTAAT TAATGGCCTA
GACGGCAGCA GAAAAGCATT ACAGCTGTTA GCAATAGCCT CTCAACACAA ACTGCCAACT
CTTTACATGG CCAATACTGT TGCCGAATTA AATGAGCTTG AAGATGAAAT ACAGTTTCTA
AATCAAAACA AAAGAGAAAT ATTGAGGTTT AGCGATTGGG AGACATTACC ATACGATGCC
TTTTCACCTC ACCAAGACAT TATTTCTCAA CGTTTAGAAA CACTAGCTAA ACTAACAGAA
ACTAAAAACC CCATTGTTCT TACAACAGTT GCCTCTTGTT TAACACGCCT TTGCCCAACG
CAGCACCTTG ATGCCCAACG CTTTCATTTA GAAGAAGGCC AAGAACTTCC CCTTGAGCAA
CTTTCCAGAA AGCTTTCCAA TGCCGGCTAC TTAAATGTTG AAAATGTCCA TGAGCATGGT
GAATACGCTA TTCGCGGCGC TTTGATGGAT GTTTTTCCTA TGGGCGCAGA AAACCCAATT
AGAATAGATT GGTTCGATAA CGAAATTGAA TCCATTAGAT GGTTTGACTC GGAAACACAG
CGCAGCATCA GCAAAGTAAC AGAAATAAAA ATGCTACCCG CAAAAGAGTT TCCAACCACC
CCTCAAGGGA TTCAACAATT TCGTCAAGCT TTTAGAGAGC GCTTTGAAAC AAACCCTCTT
TCCAGCCCAA TTTATCAAGA TATCTCAAGC GGAATCATTC CAGCTGGTAT CGAATATTAT
TTACCGCTAT TTTTCGAACA AACCGCCAGC GTTTTTGACT ACCTACCAAG CGACACTCTA
ATCATTAGAT CGGATACTTT TAACGATCAG TTAGCCAGCA TCCAGCTTGA TTTTCGTAGC
CGTCATGAAT CCCTAAATTA CAACATCGAG CGCCCTATTT TAAAGCCCGA TGAAATTTGT
CTACGTGAAG ATGAGCTCTT TGCAAAGCTC AATCAATATA CCAACATCAT CTTTTCTGCC
ACAGGTGAGC ACCCAGCCTA CCAAGCACTT GATACAGTTA AAATTGACTC TAAAGCCGCT
CACCCCCTTG GCAAGCTGCA AAATTTCTTA GCCAATACAA GCGCTAGAGT CTTAATCGTC
GCCGAGTCTG CAGGTCGTCG AGAAGCGCTA CTTGAATTAC TAAAGAAACA CAACATAAAA
CCTAAACAAG TTGATGGCTG GGAAGCCTTC AGTAAATCCA CAAAGACACT TGCCATCACA
GAAGGCAATA TCGGTCGTGG TTTTATTATC AACAATGAAT TAGCCCTCAT TCCTGAAAGC
GAAATACTCG GCGAACGCGT TTCACAACAC CGTCGACGCA ACAAACAAAA TAACATCAGT
GAAGATGCCA TTATCCGCAA CCTCACGGAG CTAAGATTAA ACGCTCCAGT TGTCCACATT
GATCATGGAG TTGGGCGTTA TCTTGGGCTA ACTAATTTAG AAATAGATGG TCAAGAAACC
GAACTTCTTA CCCTAGGTTA TGCCAATGAT GCCAAACTGT ATGTCCCTGT TTCCTCATTA
CAATTAATTT CTCGCTATAC CGGAGCCGAT GAGGATACAG CTCCACTACA CAAACTAGGT
ACAGACAAGT GGAGTGCAGC CAAACAAAAA GCGGCAGAGA AAGCCCGCGA TACCGCCGCT
GAATTGCTTG AAATTTACGC AAAACGTGAA GCCAGAGTAG GACACGCTTT CGCTAAACCC
GATGACCAAT ACGAACTCTT TTCAGCTGGT TTCCCATTCG AAGAAACACC TGACCAACAA
ATGGCGATTG ATGCGGTCAT GGCCGATATG TCCGCTAAAA AACCTATGGA CCGATTAGTT
TGTGGCGATG TAGGTTTTGG TAAAACAGAA GTGGCCATGC GAGCGGCTTT TCTTGCTGTG
CAAGATGGTA AACAAGTGGC AGTATTAGTT CCCACCACCC TACTAGCCCA ACAACATTAT
GAAAATTTCT GCGATCGTTT TGCTGATTGG CCTGTAGAAA TTGAACTCTT GTCACGATTC
CGCTCTGGCA AACAATCCAA CACATCTATT GACCGCTTAG AGTCTGGCAA AGCAGACATA
GTCGTTGGGA CTCATAAGCT CATACAAAGT GACATCAAGT TTGCCAACTT AGGTCTAGTA
ATCATTGACG AAGAACACCG CTTTGGCGTC AAACAAAAAG AACAGTTCAA AGCCTTGCGA
GCAGAGGTGG ATATTTTAAC CCTCACCGCA ACCCCTATCC CTCGTACATT AAATATGTCT
TTGTCTGGTA TTCGCGATTT ATCCATTATC GCCACACCGC CTGCCAAACG CCTGTCAGTG
AAAACCTTCG TAAAACAAAA AGACGACCAC CAAACAAAAG AAGCCATCTT GCGAGAACTT
CACCGTGGCG GCCAAGTGTA TTATTTGCAT AACGAAGTAC AAACCATTCA AAAAACGGCT
GAGGAACTGG AAGAACTCAT TCCTGAGGCA CGTGTTATCG TTGGCCATGG ACAGATGCGT
GAAAGAGAGC TGGAACAAGT CATGTCTGAC TTTTACCACA AAAGAGCCAA CGTACTCGTC
TGTTCTACCA TTATAGAAAC AGGTATCGAC ATACCAAACG CCAACACCAT CATTATTGAA
CGAGCCGATA AATTTGGCTT AGCCCAACTC CATCAATTAC GTGGTCGAGT TGGTCGCTCT
CACCATCAAG CCTATGCATA TCTATTAACC CCAAATGATC GTAAAGTCAC GGGCGACGCA
GAAAAACGCT TAGAAGCTAT TACACTGGCA GACACGCTTG GTGCGGGATT CACATTAGCA
ACTCACGATT TAGAAATCCG CGGCACCGGC GAATTATTAG GCGACGGCCA AAGTGGTCAC
ATTGAGCATG TAGGCTTCTC TCTCTTCATG GACATGCTAG ACAGAGCAGT AAAATCCCTG
AAAAACGGCG AATCTCCTGA CATAGACATT ACATCTCCGG CGCAAACCGA AGTAAACTTA
CGAGTACCTG CACTCATTCC AGAAGATTAT TTAGGTGATG TACATTCACG TTTGATTCTG
TATAAACGTA TTGCCAGCGC AAAAAACAGC GAAGAACTAA AAGATCTTCA AGTAGAAATG
ATTGACCGCT TTGGACTACT GCCTGACGCA ACGAAAAATC TATTCCGTCA AACAGAACTG
AAACTCAAAG CAGAAAGCCT TGGGATTAAT AAAATTGAGG CCAATGCAAA AGAAGGCAAG
ATTTTCTTCA ACAGCAAAAC ACCGGTCGAC CCCATGAAGC TTATTCGACT AATCCAGACA
AAACCCGACA CTTACAAACT GGTTGGCTCT GATACATTGA AATTTTTAGC TCCAATGAAC
AGCGCAGAAG AGCGTTTCCA ACAAACAACA ATGACTTTGG AATTATTACA TTGA
|
|---|
| Protein sequence | MSETVSITLK PGFKNLINGL DGSRKALQLL AIASQHKLPT LYMANTVAEL NELEDEIQFL
NQNKREILRF SDWETLPYDA FSPHQDIISQ RLETLAKLTE TKNPIVLTTV ASCLTRLCPT
QHLDAQRFHL EEGQELPLEQ LSRKLSNAGY LNVENVHEHG EYAIRGALMD VFPMGAENPI
RIDWFDNEIE SIRWFDSETQ RSISKVTEIK MLPAKEFPTT PQGIQQFRQA FRERFETNPL
SSPIYQDISS GIIPAGIEYY LPLFFEQTAS VFDYLPSDTL IIRSDTFNDQ LASIQLDFRS
RHESLNYNIE RPILKPDEIC LREDELFAKL NQYTNIIFSA TGEHPAYQAL DTVKIDSKAA
HPLGKLQNFL ANTSARVLIV AESAGRREAL LELLKKHNIK PKQVDGWEAF SKSTKTLAIT
EGNIGRGFII NNELALIPES EILGERVSQH RRRNKQNNIS EDAIIRNLTE LRLNAPVVHI
DHGVGRYLGL TNLEIDGQET ELLTLGYAND AKLYVPVSSL QLISRYTGAD EDTAPLHKLG
TDKWSAAKQK AAEKARDTAA ELLEIYAKRE ARVGHAFAKP DDQYELFSAG FPFEETPDQQ
MAIDAVMADM SAKKPMDRLV CGDVGFGKTE VAMRAAFLAV QDGKQVAVLV PTTLLAQQHY
ENFCDRFADW PVEIELLSRF RSGKQSNTSI DRLESGKADI VVGTHKLIQS DIKFANLGLV
IIDEEHRFGV KQKEQFKALR AEVDILTLTA TPIPRTLNMS LSGIRDLSII ATPPAKRLSV
KTFVKQKDDH QTKEAILREL HRGGQVYYLH NEVQTIQKTA EELEELIPEA RVIVGHGQMR
ERELEQVMSD FYHKRANVLV CSTIIETGID IPNANTIIIE RADKFGLAQL HQLRGRVGRS
HHQAYAYLLT PNDRKVTGDA EKRLEAITLA DTLGAGFTLA THDLEIRGTG ELLGDGQSGH
IEHVGFSLFM DMLDRAVKSL KNGESPDIDI TSPAQTEVNL RVPALIPEDY LGDVHSRLIL
YKRIASAKNS EELKDLQVEM IDRFGLLPDA TKNLFRQTEL KLKAESLGIN KIEANAKEGK
IFFNSKTPVD PMKLIRLIQT KPDTYKLVGS DTLKFLAPMN SAEERFQQTT MTLELLH
|
|---|
| |