| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmwyl1_1041 |
|---|
| Symbol | |
|---|
| ID | 5367782 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinomonas sp. MWYL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009654 |
|---|
| Strand | - |
|---|
| Start bp | 1159527 |
|---|
| End bp | 1161365 |
|---|
| Gene Length | 1839 bp |
|---|
| Protein Length | 612 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640803376 |
|---|
| Product | RNA polymerase, sigma 70 subunit, RpoD |
|---|
| Protein accession | YP_001339907 |
|---|
| Protein GI | 152995072 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.28445 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGACA CTCAACAGTC ACGTCTCAAA GAGCTGATCT CCAAGGGTAA AGAACAAGGT
TACCTAACTT ACGCTGAAGT TAATGACCAC CTCCCTGATG ACCTTTCAGA CCCGGAGCAA
GTAGAAGAAA TCATTGCCAT GATCAATGAC ATGGGCATCA CGGTTTCTGA AGTTGCACCA
GATAAGGATA GTCTCCTCAT GGAAGAAGGT GACGCTACAG ATGAAGCCGC AGCAGAAGAA
GCGGCTGCCG CATTAGCTGC TGTAGAAGGC GATATCACTA GAACAACAGA CCCTGTGCGC
ATGTACATGC GTGAAATGGG AACAGTTGAA CTACTGACTC GCGCGGGCGA AATAGCGATT
GCTAAACGTA TTGAAGAAGG TACGCGCGAA GTTATGGCGG CTATTTCTTA CTTCCCAGGT
GCGGTAGACG TACTACTTGA CGCTTACGCG AAAGTACAGG AAGAAGAAGG TCGTTTAAGC
GATATATTTA GCGGTTTCAT CGACGGCGAT GGCGAAGAAC CTGTTTTTGA AGATGTCGCT
ACCGAAGAGC CAATCATCGA TGAAGACACT GTAGACAGTG ACGAAGATGA TGACGATTCA
GATACCGCTG AAGAAGAAAC AGATAACGGC CCAGATCCAG AAGAAACTGC ACTACGCTTC
AACGATATTA CGCGTATCTA CACTGAGCTA AAAGAATTAC TTGAAACACG CAATCGCCAA
GACCCAGCAG TACAAAGTAA GCAAGAAGAG TTGAGCATCA GTTTCGCTCC TATCAAACTT
GTTCCTAAAC TGTTTGATGA TTTAGTTGAT CGCGTGCGTT CACGTATGGA AAAAGTACGC
GAGCAAGAGC GCCTTATCAT GCAAGTTTGT GTTCGTAAAT CTGGCATGCC AAGAACTGAG
TTTTTAAAAC GCTTCCCAAG CAATGAGACA AATTCAGATT GGCTTAAAGA GCAAATTGCT
TCTGGCGCTG ATTACGCGGC TACTCTTGAA GAAAACGAAG CTGAGTTTAT GCGTAGCCAA
CGCAAACTTC GCGCAGTTTC AAAAGAGACT GGCCTGACCA TCGCAGAATT AAAAGAAATC
AACCGTCGCA TTTCTATCGG GGAAACTCGA GCTCGCCGCG CGAAGAAAGA AATGGTTGAA
GCTAACTTGC GTTTGGTTAT CTCTATTGCG AAAAAATACA CAAACCGCGG CCTACAATTC
TTGGATCTTA TCCAAGAAGG TAACATTGGC CTAATGAAAG CGGTTGATAA GTTTGAATAT
CGTCGTGGTT ATAAGTTTTC TACTTACGCC ACGTGGTGGA TTCGTCAGGC GATCACACGT
TCGATTGCCG ATCAGGCCCG TACAATCCGT ATTCCAGTAC ACATGATTGA AACGATTAAC
AAACTAAATC GTATCTCTCG TCAGATGCTT CAGGAAATGG GGCGCGAAGC AACGCCAGAA
GAATTGGCCG CTCGCATGGA TATGCCTGAA GACAAGATTC GAAAAGTGTT GAAGATAGCA
AAAGAACCTA TCTCTATGGA AACGCCAATC GGTGATGATG AAGATTCACA CCTAGGTGAC
TTCATTGAAG ACGATGGCGC TGAATCCCCT ATTGATATAG CAACTATCGA AGGTTTGCGT
GAATCAACCA CCATGGTTCT TGCAGGTCTA ACTGCTCGTG AAGCGAAAGT ATTGCGCATG
CGTTTTGGTA TCGATATGAA TACTGACCAC ACCCTTGAAG AGGTTGGCAA ACAATTTGAC
GTAACGCGTG AACGTATTCG TCAAATCGAA GCAAAAGCAC TACGCAAACT ACGCCACCCT
AGCCGTTCAG AACACCTAAG AAGTTTCTTA GACGACTGA
|
|---|
| Protein sequence | MPDTQQSRLK ELISKGKEQG YLTYAEVNDH LPDDLSDPEQ VEEIIAMIND MGITVSEVAP
DKDSLLMEEG DATDEAAAEE AAAALAAVEG DITRTTDPVR MYMREMGTVE LLTRAGEIAI
AKRIEEGTRE VMAAISYFPG AVDVLLDAYA KVQEEEGRLS DIFSGFIDGD GEEPVFEDVA
TEEPIIDEDT VDSDEDDDDS DTAEEETDNG PDPEETALRF NDITRIYTEL KELLETRNRQ
DPAVQSKQEE LSISFAPIKL VPKLFDDLVD RVRSRMEKVR EQERLIMQVC VRKSGMPRTE
FLKRFPSNET NSDWLKEQIA SGADYAATLE ENEAEFMRSQ RKLRAVSKET GLTIAELKEI
NRRISIGETR ARRAKKEMVE ANLRLVISIA KKYTNRGLQF LDLIQEGNIG LMKAVDKFEY
RRGYKFSTYA TWWIRQAITR SIADQARTIR IPVHMIETIN KLNRISRQML QEMGREATPE
ELAARMDMPE DKIRKVLKIA KEPISMETPI GDDEDSHLGD FIEDDGAESP IDIATIEGLR
ESTTMVLAGL TAREAKVLRM RFGIDMNTDH TLEEVGKQFD VTRERIRQIE AKALRKLRHP
SRSEHLRSFL DD
|
|---|
| |