Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MmarC7_0164 |
Symbol | dapF |
ID | 5328025 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanococcus maripaludis C7 |
Kingdom | Archaea |
Replicon accession | NC_009637 |
Strand | + |
Start bp | 176409 |
End bp | 177242 |
Gene Length | 834 bp |
Protein Length | 277 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 640792685 |
Product | diaminopimelate epimerase |
Protein accession | YP_001329385 |
Protein GI | 150402091 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.543882 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.191958 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATTTA CAAAAATGCA TGGTTTAGGC AACGATTATA TCTACGTAGA TGCTACCTCA CAAAAAATTG AAAATCCAAA CGAAATTTCA AGATTTGTGA GTGACAGGCA CTTTGGAATC GGGTCAGATG GTCTTGTATT AATTCTTCCT TCAGAAATAG CTGACTTTAA AATGAGAATG TTTAATTCAG ATGGTTCAGA AGCTGAAATG TGTGGTAATG CAATTCGTTG CGTTGGAAAG TTCGTTTATG ATAAAAAAAT GACCGATAAA TCAACAATTA CGATTGAAAC ACTTGCAGGA ATAAAGGTTC TTGAAATGAC TGTCGAAAAT GACAAGGTAG TTTTGGTAAA AGTCGATATG GGAGAACCAA TCTTAAAAGC AGAAACAATT CCTGTTTTAA GTGAAAAACA CCCTGTAATC GATGAAGAAA TAACTGCAAA AGATTACTGC TACAATTTCA CCTGCGTTTC AATGGGGAAC CCGCATGCAA TAACATATAT TGAAAATGTA AGCGAATTCC CTCTTGAAAA AATCGGCCCA TTATTTGAAT TTCACGAAAA ATTCCCAAGA AAAACAAATG TCGAGTTCGT TGAATTAATC GATGATTCTA CTATTAAAAT GAGAGTTTGG GAAAGAGGTG CTGGGGAAAC GCTTGCTTGC GGAACTGGAG CTTGCGCAGT TTTAGTTGCT TCCGTTTTAA AAGGATATGT TGGTAGAAAA GCAACAGTCA AACTTCTCGG TGGAGATTTA ACAATTGAAT GGAATGAGAG TGACAATCAC ATCTACATGA CCGGTCCAGC AACAACCGTC TTTGAAGGAG AAATTGATAT TTAA
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Protein sequence | MKFTKMHGLG NDYIYVDATS QKIENPNEIS RFVSDRHFGI GSDGLVLILP SEIADFKMRM FNSDGSEAEM CGNAIRCVGK FVYDKKMTDK STITIETLAG IKVLEMTVEN DKVVLVKVDM GEPILKAETI PVLSEKHPVI DEEITAKDYC YNFTCVSMGN PHAITYIENV SEFPLEKIGP LFEFHEKFPR KTNVEFVELI DDSTIKMRVW ERGAGETLAC GTGACAVLVA SVLKGYVGRK ATVKLLGGDL TIEWNESDNH IYMTGPATTV FEGEIDI
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