Gene MmarC7_0114 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmarC7_0114 
Symbol 
ID5328089 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanococcus maripaludis C7 
KingdomArchaea 
Replicon accessionNC_009637 
Strand
Start bp131897 
End bp133705 
Gene Length1809 bp 
Protein Length602 aa 
Translation table11 
GC content31% 
IMG OID640792635 
ProductTPR repeat-containing protein 
Protein accessionYP_001329335 
Protein GI150402041 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.606428 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.312557 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAAAATAA AGGGGGTTTT ACTACTATTT TCAATTTTTT TTATTATGAA TACTTGTTAT 
GCTGGGACGA TTGGATCATC TACAGAAGAC TGGATTGACA GTGGACTTGA GTATTTTGGA
AACGGAAACT TTGAAAAATC AATTGAAAGT TTTGATGAAA CTTTAAGGAT TAATCCGTAC
AATATGGAAG CACTGGTCAG CAAGGGCTAT ATTTTATATG CCATAAATGA GTCTGAAAAA
GCCATAGAAT GTTTTGATAA AGCATTGGAA ATCAATTCTG ACTATTACGA CACTTGGCAG
TACAAAGGAT ATGCATTGCA TGATCTTGAA AGATACGAAG AAGCCATAGA ATGTTTTGAT
AAGTCATTGG AAATATATGA AGAAAATCCA GAAGTTTACT ATATGAAAGG TGCCTCTTTA
TATGGTCTTG AAAGATACGA AGAAGCCATA GAATGCCTTG ATATCGCTTT AGAAACCTAT
CCAAATAACA TATACATGTT AACGGATAAA GGAAATACTC TTTATGAACT CGAAAGATAC
GAAGAAGCCA TAGAATGTTT TGATAAAGCA TTAAAATATG TTAGTTATCT AAATGCTTGG
AATGATAAAG GAAATACATT ATGTAAACTT GAAAGGTACA GTGAAGCAGT TCAATGTTAT
GATAAAGCTT TAGAAATAGA TTCTAGCAGT TATGTTTTAT GGGGTAATAA AGGATATGCT
ATTTATGAAC TTGGAAAATA TGAAAAAGCC ATAATATGTT TTGACAGATC TTTGGAATTA
AATTTTGATT ATCTCGAGTC TAATTACTAT AAGGGGGATT CACTTTATGA ACTCGAAAGA
TACGAAGAAG CCATAGAATG CTATGATAAA GCTTTAGAAA TAGATCCTAA AAATGAATAT
ATTTGGTATA GTAAAGGCTG TTCTCTTTCA AATCTTGAAA GATACGAAGA AGCTATCGAG
TGTTTGGATA AGGCTTTAGA AATAGATTCT AAAAATGAGA AATTCTGGAA TAAAAAAGGA
TATTCTTTAA ACGAACTTGA AAGATACGAA GAAGCTAGCG AGTGTTTGGA TAAGGCTTTA
GAAATAGATT CTAAAAATGA GAAATTCTGG AATAACAAAG GTTATGCTTT AGCAGGACTT
GAAAGATACG AAGAAGCAAT AACCTGTTAT GATGAAGCAT TGGAATTAAA CAATAACTAT
AGTAAGGCAT ATAAAAACAA AGGATATTCT TTGGCAGGAC TTGAAAGATA CGAAGAAGCC
ATAGAATGCT ATGATAAAGC TTTAGAAATA GATTCTAATT ACACTAAAGC ACAGCAAAAT
AAAGGAAATG CCCTTTTTGA ACTTGGAAAA TATGAGGAAG CACTTGAATG CTATGATTTA
GTTATTGCAG TTGATAAAAG CAATGAAAAA GCATGGGCCG ATAAAGGAAA TGCCCTTTTT
GAACTTGAAA GATACGAAGA AGCCATAGAA TGTTTTGATA AGGCCATTGA ATTAGATTCC
AATGACAAAG AAATTTGGAA TAACAAAGGG GATACTCTTT ATAAACTCGA AAGATACGAA
GAATCAATTG AATGCTATGA TGAAGCATTG GAATTAGATT CAGAAGATGA AGAACTTTGG
AATAACAAAG GAAACATATT TTTTAAACTT GAAAACTATG AAGAAGCCTT AAAATGTTAC
GATAGAGCAT TGGAAATAAA TACAAACTTT GAATTGGCAA AACTTGGAAA ACAAGATACT
GAAGATCAAC TCAATAGTTT TTCATACATT TTAGCTAATT TCTTCAAAAA AATTTTTGGT
GGTAATTAG
 
Protein sequence
MKIKGVLLLF SIFFIMNTCY AGTIGSSTED WIDSGLEYFG NGNFEKSIES FDETLRINPY 
NMEALVSKGY ILYAINESEK AIECFDKALE INSDYYDTWQ YKGYALHDLE RYEEAIECFD
KSLEIYEENP EVYYMKGASL YGLERYEEAI ECLDIALETY PNNIYMLTDK GNTLYELERY
EEAIECFDKA LKYVSYLNAW NDKGNTLCKL ERYSEAVQCY DKALEIDSSS YVLWGNKGYA
IYELGKYEKA IICFDRSLEL NFDYLESNYY KGDSLYELER YEEAIECYDK ALEIDPKNEY
IWYSKGCSLS NLERYEEAIE CLDKALEIDS KNEKFWNKKG YSLNELERYE EASECLDKAL
EIDSKNEKFW NNKGYALAGL ERYEEAITCY DEALELNNNY SKAYKNKGYS LAGLERYEEA
IECYDKALEI DSNYTKAQQN KGNALFELGK YEEALECYDL VIAVDKSNEK AWADKGNALF
ELERYEEAIE CFDKAIELDS NDKEIWNNKG DTLYKLERYE ESIECYDEAL ELDSEDEELW
NNKGNIFFKL ENYEEALKCY DRALEINTNF ELAKLGKQDT EDQLNSFSYI LANFFKKIFG
GN