| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC7_0017 |
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| Symbol | |
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| ID | 5327941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanococcus maripaludis C7 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009637 |
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| Strand | - |
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| Start bp | 24236 |
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| End bp | 27334 |
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| Gene Length | 3099 bp |
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| Protein Length | 1032 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 640792539 |
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| Product | HsdR family type I site-specific deoxyribonuclease |
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| Protein accession | YP_001329240 |
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| Protein GI | 150401946 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.13213 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00259353 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTAATT TATGTGAAGA TACGATTGAA CAGGGGACTC TTGAGCTTTT AGAAAGTATT
GGATACGAAA TAATTTCCGG TCCTGAAATT GCGCCTGATG GCACTTCTCC AGAACGTAAA
GATTATTCTG AAGTTGTACT TGTTTCTCGC CTTAGAAACG CAATTTCAAG AATAAATCCA
AAAGTTCCAG AGGTTGCAAG GGAAGATGCA CTTCGAAAAG TCCTGAGGCT TGAAAATCCA
AATTTACTCA TGAATAACGA GAAGTTTCAC GAGTTTATAT TTAAGGGAAT TGATGTAGAA
TATCCAATTG ATGGAAGAGT TAAGGGAGAT AAGGTTTACT TACTCGATAA AAACCCGTTA
AAAAACGAAT TTGTTGCAGT AAACCAGTTT ACAATCATTC AGAATAATAA AAACAGGCGG
CCAGATATCG TTATATTTGT AAATGGGCTT CCACTTTCTG TAATCGAACT TAAAAATCCT
ACAAAAGAAG ATGCTACAAT TTGGAGTGCT TATAACCAAA TTCAAACGTA TAAATCGGAA
ATTTCAGAAC TTTTTAAGTA TAACGAGCTT ATCCTAATTT CTGATGGTAC GGAATCGCGA
ATAGGTACGC TTTCTTCAAA TAAAGAATGG TTTTTACCGT GGAAATCAAT TGATGGAACT
TCTGAAATTA ATAATGGAGT AAGCCAGCTA AAGATTTCAA TTCTTGGAAT GTTTGATAAA
ACGCGGTTTA TTGACATAAT AAAGAATTTT ATTGTTTTTA AAAAGGATGG AAAAGACATT
ATAAAAGTTA TTGCAGGATA CCACCAGTAT TTTGCGGCAA ATCGTGCAAT TGAAAAAACT
ATTGAAGCAG TTTCGGGAAA TCGCCGGTGT GGTGTTGTAT GGCATACACA AGGGTCTGGA
AAAAGTCTTA CAATGGCATT TTATGCGGGA AAACTTGCGA TTACTCCAGA ACTTAAAAAT
CCTACAATCG TAGTTGTAAC TGATAGGAAT GACCTTGACG ACCAGCTGTT TGGAACGTTT
GCGTCATGTA TTGATGTATT AAAACAGACT CCTGTTCAGG CAAAAAATGC AGAAGACTTA
AAGGAACAAT TGAAAGTTGT ATCGGGTGGA GTAATCTTTA CAACGATGCA GAAGTTTTCT
GTTGATGAAC TTAATGCAAA ATATCCAATG CTTTCTGATC GAGAAAACAT AATCGTGATG
GCTGATGAAG CTCACAGGAG CCAGTACGGA CTTAAAGCGA GATCTGTTGA GAAAAACGGT
GAAGTTGGTA TAACTTATGG TTTTGCTAAA TATTTGCGTG ATGCGCTACC AAATGCTTCA
TTTATTGGAT TTACAGGAAC TCCGATAGAC TTTGAAGATA AAAGCACCCG TTCGATATTT
GGTGAATATA TCGATATTTA CGATGTAAGA CGGGCAGTTG CTGATGGTAG AACTGTAAAA
ATCTACTATG AAAGCCGTGT TGCAAAAATC GGAATTGAAA ACGACGTTCT TGCTAAACTT
GATGCAGAAT TTGAGGAAGT TACCGAATTT GAAGAAAATT ATAAAAAAGA GAAATTAAAG
GGCAAATGGG CACAGCTTGA AGCGATTGTT GGAAGCAATG ACAGGATTTC AAACGTTGCA
CAGGATATTG TCAATCATTT TGAAAAACGG GAAGAAACGC TTAGTGGAAA AGCAATCGTT
GTATGCATGA GCAGGCGAAT TTGCGTTGAC CTTTATGACG AAATTATTCG TTTACGGCCT
GAGTGGCATA ATGACGATGA CAAACTCGGT GTTTTAAAAG TTATAATGAC CGGTTCTGCG
GCTGATGGCA CAGAATGGCA AAAACACATA AGGACAAAAG GAAAACGAAA AGAGCTTGCT
GACCACTTTA AAGATTCTGA AAGCGAATTT AAAATTGCGA TTGTTCGTGA TATGTGGCTT
ACTGGCTTTG ATGTTCCGTG TTTACACACA CTTTACATCG ATAAGCCTAT GAAAGGGCAC
GGATTAATGC AGGCGATTGC AAGGGTAAAC AGGGTGTTTA GAGATAAGCC TGGAGGACTT
GTTGTTGACT ACATCGGAAT TGCACAGGAT TTAAAGTATG CGCTTATGAA TTACACTTCA
TCTGGCGGTA CTGGAAAACC GACGTATGAT ATAGAAGATG CAGTAAACCT CATGAAATCA
AAATACGAAG CTATGAAAGA TTTCTTTTAT GGTCATGACT ATTCAAAATT CTTTAATGGC
ACAAATATTG AAAAAATGGA TGTAATTCCA GAAACTTTAG AATTTATCCT CAATCAGCCT
GACGGGAAAA AGCGGTTTGT TAAACTTGCG CTTGAACTTA TAAAGTCATA CGCTCTATCT
CTGCCGCATG AAGAAGCCGT AAAAATCCGT GAGGAAGTCG CGTTCTTTAC AGGGGTTAAA
GCGGCACTTT ATAAAAATAC GGAAATTTCA GGAAAACCAG AAGATGAACT AAACAGCGCG
ATAAAACAGA TTGTATCTGG TGCAGTTCGT ACTGATGGAA TAATCGATGT ATTTGGTGAA
GCAGGACTTG AAAAACCCGA TATTTCGATT CTGTCTGAAC AGTTCCTCGA AGATGTAAAA
AACATGAAAT ATAAAAATTT AGCACTTGAA ACGCTTAAAA AAATATTGAA TGACGAGATA
AGGGCTAAAT TTAAAAACAA TCTTTTGCAG GAAAAGAAAT TTTCAGAGAT GATTGAAAAC
GCGATTAAAA GATACCACAA TAAAGCGATA GATTCGGCGG CAGTTATTCA AGAACTCATA
GCAATTGCAA AGGAGATTGA AAACGCTAAA AGAAGAGGGG AAGAATTACA TTTAACTGAA
GAAGAACTCG CATTTTACGA TGCGTTATCA GACAACGATT CAGCACAGGA AATTTTAGGA
ACAGAGATTT TAACAGAAAT TGCACGAGAA CTTACGGAAA CATTAAGGAA TAGCGTATCT
ATTGACTGGG AAGTTAGGGA AACTGTAAGG GCAACTTTAA GAGTTAAAAT TAAAAGGTTA
CTTCGAAAAT ATGGCTATCC TCCAGACAAA CAGCAGATTG CAGCTGACCT TGTTTTAAAA
CAGGCTGAAA CAATTTCTAA AGAATGGATT AAGACTTAA
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| Protein sequence | MSNLCEDTIE QGTLELLESI GYEIISGPEI APDGTSPERK DYSEVVLVSR LRNAISRINP
KVPEVAREDA LRKVLRLENP NLLMNNEKFH EFIFKGIDVE YPIDGRVKGD KVYLLDKNPL
KNEFVAVNQF TIIQNNKNRR PDIVIFVNGL PLSVIELKNP TKEDATIWSA YNQIQTYKSE
ISELFKYNEL ILISDGTESR IGTLSSNKEW FLPWKSIDGT SEINNGVSQL KISILGMFDK
TRFIDIIKNF IVFKKDGKDI IKVIAGYHQY FAANRAIEKT IEAVSGNRRC GVVWHTQGSG
KSLTMAFYAG KLAITPELKN PTIVVVTDRN DLDDQLFGTF ASCIDVLKQT PVQAKNAEDL
KEQLKVVSGG VIFTTMQKFS VDELNAKYPM LSDRENIIVM ADEAHRSQYG LKARSVEKNG
EVGITYGFAK YLRDALPNAS FIGFTGTPID FEDKSTRSIF GEYIDIYDVR RAVADGRTVK
IYYESRVAKI GIENDVLAKL DAEFEEVTEF EENYKKEKLK GKWAQLEAIV GSNDRISNVA
QDIVNHFEKR EETLSGKAIV VCMSRRICVD LYDEIIRLRP EWHNDDDKLG VLKVIMTGSA
ADGTEWQKHI RTKGKRKELA DHFKDSESEF KIAIVRDMWL TGFDVPCLHT LYIDKPMKGH
GLMQAIARVN RVFRDKPGGL VVDYIGIAQD LKYALMNYTS SGGTGKPTYD IEDAVNLMKS
KYEAMKDFFY GHDYSKFFNG TNIEKMDVIP ETLEFILNQP DGKKRFVKLA LELIKSYALS
LPHEEAVKIR EEVAFFTGVK AALYKNTEIS GKPEDELNSA IKQIVSGAVR TDGIIDVFGE
AGLEKPDISI LSEQFLEDVK NMKYKNLALE TLKKILNDEI RAKFKNNLLQ EKKFSEMIEN
AIKRYHNKAI DSAAVIQELI AIAKEIENAK RRGEELHLTE EELAFYDALS DNDSAQEILG
TEILTEIARE LTETLRNSVS IDWEVRETVR ATLRVKIKRL LRKYGYPPDK QQIAADLVLK
QAETISKEWI KT
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