Gene Smed_3485 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3485 
SymbolrplT 
ID5324373 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3691847 
End bp3692251 
Gene Length405 bp 
Protein Length134 aa 
Translation table11 
GC content60% 
IMG OID640792437 
Product50S ribosomal protein L20 
Protein accessionYP_001329138 
Protein GI150398671 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0292] Ribosomal protein L20 
TIGRFAM ID[TIGR01032] ribosomal protein L20 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.500109 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones49 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACGTG TAAAACGCGG CGTAACCTCC CACGCCAAGC ACAAGAAGAC GCTCAAGGCA 
GCCAAGGGTT TCTACGGCCG CCGCAAGAAC ACCATCCGCG CCGCCAAGGC AGCGGTTGAC
CGTTCGAAGC AGTTCGCCTA CCGCGACCGC AAGGTCAACA AGCGCAATTT CCGTGCGCTC
TGGATCCAGC GCATCAACGC TGCCGTCCGC GAATTCGGCC TCACCTACGG CCGCTTCATC
GACGGTCTGA ACAAGGCCGG CATCGAAGTC GATCGCAAGG TACTGTCCGA CATGGCGATC
CATGAGCCGG CAGCATTCGG CGCTCTGGTC GAAGCTTCCA AGAAGGCGCT TGCCTATCTC
AAGGATGCCG GCACGGCAAA CGAGTTTGAA AGCGCTGTCC GTTAA
 
Protein sequence
MARVKRGVTS HAKHKKTLKA AKGFYGRRKN TIRAAKAAVD RSKQFAYRDR KVNKRNFRAL 
WIQRINAAVR EFGLTYGRFI DGLNKAGIEV DRKVLSDMAI HEPAAFGALV EASKKALAYL
KDAGTANEFE SAVR