| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3388 |
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| Symbol | |
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| ID | 5324272 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 3591205 |
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| End bp | 3593457 |
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| Gene Length | 2253 bp |
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| Protein Length | 750 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640792339 |
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| Product | 1A family penicillin-binding protein |
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| Protein accession | YP_001329044 |
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| Protein GI | 150398577 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAGCG GCAAATCAGG ACAGCGGATC GAGCCTTCCT TCGGCGGTAA CGACGACGGC
GGCGAGCTGC GGGTCGACGC GAGCGATCGC GTGGCGGGCG GCGGACGCAA GCCGAAGCGC
GCCAAGCCGC CCGAACGCGG CGCCAAGGGA GAAAAACGCG CCAGGCGTGC CGGCGGGCGC
GGCTCCGGCA AAAGCGGTTC CGGCGGGTTC TTCGGCCTCG CCCGGCGGTT CGCCTATTGG
TGCGTCGTGC TCGGCATATG GGGTGCGATC GGCGTCGGCG GGCTCGTGCT CTATTACGGA
GCGCGCATGC CGAGCGCGAC GAGCTGGTCG ATCCCAGAGC GGCCGCCCAA CGTCAAGATT
GTCGCTGCCA ATGGCGAGAT CATCGCCAAC AGGGGCGCGA CAGGCGGAGA GGCTGTCGCG
CTCGAAGACA TGTCGCCCTA TATCCCTCAG GCGGTGATCG CCATCGAGGA CCGCCGATTC
CATTCGCATT TCGGCGTTGA CCCGCTGGGG CTGGCGCGCG CCATGCTCAC GAACGTCATG
AGCGGCCGCA TGGTCCAGGG CGGCTCCACG CTCACCCAGC AGCTTGCCAA AAACCTGTTC
CTCTCGCCGG AGCGCACGCT CGAGCGAAAG GTGCAGGAGG TGCTGCTCGC TTTCTGGCTG
GAGCAGAAAT ACACCAAGGA CCAGATCCTG GCGATGTATC TCAACCGCGT CTTCTTCGGG
TCGAACGCCT ATGGCGTCGA GGCGGCTTCG CGGCGCTACT TCAACAAGTC GGCGCGCGAC
GTCAATCTCG GCGAGGCGGC ATTGCTCGCG GGCCTTCTGA AAGCCCCTTC ACGGCTGTCG
CCGGCCCGGA ACCCCGAAGC AGCGGAGGAG CGCGCGCAGC TCGTGCTTGG CGCCATGCGT
GAGGAAGGCT TCATCAACGA TGCCGAGATC AAGACGGCGA TGTCGCAGGC GCCGACCCGG
GCAAAGAGCT TCTGGTCCGG CGCCGAACAC TACGTCGCGG ATATGGTTAT GGACCAGCTC
CCCGGCATGA TCGGCGAAGT TACACAAGAC CTCGTCATCG ACACGACCAT CGACCTTGCG
CTCGAGAAGA GGGCCGAAGA GATTCTCGCC GAAAGGCTTG AGACGGAGGG CGGCAAGGTC
AACGCCTCGC AGGCGGCGCT CGTCTCCCTC GACGGCACCG GTGCCATCCG GGCACTGGTT
GGCGGCAGGG ACTATGCCGA AAGCCAGTTC GATCGCGCCT CCAAGGCCAA GCGGCAGCCA
GGATCGGCCT TCAAGCCTTT CGTCTATGCA GCGGCACTCG AGATCGGCCG CACGCCGATG
TCCGTTCGCA ACGACGTGCC TGTCAGGATC GGCAACTGGA CGCCTGAAAA CTATGACCAG
AAATATCGAG GCGAGGTGAC GCTCGCCGAT GCGCTCGCCA ATTCGCTGAA CACCATCGCC
GCCCAGCTGG TGATGGAGGT CGGGCCGCAA AACGTGGTCA AGCTCGCGCA CCGCCTCGGC
ATCGATTCCG AGATGCAGGC CAATGCATCG ATCGCGCTCG GCACGTCGGA AGTGACGCTG
GTGGAGCTGA CGTCCTCCTA TGCGCCTTTC ATGAATGGCG GCTACAAGGC GACGCCGCAC
GTTATCCGGC GCATCTCTAC CGCCGACGGC ACCGTGCTTT ACGAGAACAC CTACGACAAT
CCGCCCCGGG TGCTCGATCC GGCGGTCGTC AGCGAGATGA ACCGGATGAT GGTGCGCGTG
CTGACTGACG GCACCGGCAA GAATGCACGT CTGCCGGGCT GGGAGGCAGC GGGAAAGACC
GGAACGACGC AATCATTCCG CGACGCGCTC TTCGTCGGCT ACACCTCCAG CCTCGCGACC
GGTATCTGGT TCGGCAATGA CGACGGCAAG TTCATGAAGA AGGTCACCGG CGGCGGCCTT
CCCGCCCGTG CCTGGCATGA TTTCATGACG GCGGCGCATG AGGGCCTCTC GCCCTCGCCG
CTCTTCGGCA CGACGGGCGT ACAGCCGGTT TTCGACCAAG GCATCGCGGC TGCGGAGGAG
ATGCCGGTTG ACGGTTTCGA TACCGGTAGC CCGGATGTTT TTCCTGAGCG CCCGGCAGGT
ATGGATGGCA TGGAAAGCAT GGACGGCATG GCCGCCGCCG ATCAGATCCG GCCGGCAGAA
CAGGCGGGAG GGCCGATTCC GCCGGCGGGC GTCGGCGAGA CCACCGGAGG CACCCGCCGC
ACGACGCTTT TCGATCTGCT GACCGGAGGC TGA
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| Protein sequence | MASGKSGQRI EPSFGGNDDG GELRVDASDR VAGGGRKPKR AKPPERGAKG EKRARRAGGR
GSGKSGSGGF FGLARRFAYW CVVLGIWGAI GVGGLVLYYG ARMPSATSWS IPERPPNVKI
VAANGEIIAN RGATGGEAVA LEDMSPYIPQ AVIAIEDRRF HSHFGVDPLG LARAMLTNVM
SGRMVQGGST LTQQLAKNLF LSPERTLERK VQEVLLAFWL EQKYTKDQIL AMYLNRVFFG
SNAYGVEAAS RRYFNKSARD VNLGEAALLA GLLKAPSRLS PARNPEAAEE RAQLVLGAMR
EEGFINDAEI KTAMSQAPTR AKSFWSGAEH YVADMVMDQL PGMIGEVTQD LVIDTTIDLA
LEKRAEEILA ERLETEGGKV NASQAALVSL DGTGAIRALV GGRDYAESQF DRASKAKRQP
GSAFKPFVYA AALEIGRTPM SVRNDVPVRI GNWTPENYDQ KYRGEVTLAD ALANSLNTIA
AQLVMEVGPQ NVVKLAHRLG IDSEMQANAS IALGTSEVTL VELTSSYAPF MNGGYKATPH
VIRRISTADG TVLYENTYDN PPRVLDPAVV SEMNRMMVRV LTDGTGKNAR LPGWEAAGKT
GTTQSFRDAL FVGYTSSLAT GIWFGNDDGK FMKKVTGGGL PARAWHDFMT AAHEGLSPSP
LFGTTGVQPV FDQGIAAAEE MPVDGFDTGS PDVFPERPAG MDGMESMDGM AAADQIRPAE
QAGGPIPPAG VGETTGGTRR TTLFDLLTGG
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