Gene Smed_3379 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3379 
Symbol 
ID5324263 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3579975 
End bp3580526 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content64% 
IMG OID640792330 
Producthypothetical protein 
Protein accessionYP_001329035 
Protein GI150398568 
COG category[S] Function unknown 
COG ID[COG3807] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.393119 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCTTCG TCATGCGTCA CGTCATTTCC AGAATTTCCG CCCTCACCAT GGCAGCCCTG 
CTTGGAGCGG TTTTGACGGC CTCCACCGCC CATGCCCAGG CGGCGAAGGG TCCGAGCGGG
CTTCCCCTCC CCCGTTTCGT CAGCCTGAAG GCGAAAAGCG TGAACCTGCG CATCGGCCCC
AGCGTCGATT ACGCCGTCGC CTTCCGCTAT CTCAAGTCCG GCGTGCCCGT CGAGATCATC
CAGGAATATG ACAATTGGCG CCGCATCCGC GACGCCGACG GTACCGAAGG CTGGGTGAAC
CAGGCGCTCC TCTCCGGCGA CCGCACGGCG ATGGCAGCCC CCTGGATGCG CAGCAAAGGC
GAAGGTGTTT TCGTCAATAT GCGCCGGGAT CCGCAAGGGA CGGCGCCGAT CGTCGCCCGC
ATCGAACCGG GCGTGATGCT GCATATCGGC GAATGCAACG GCGACTGGTG CCATGCCGAG
ACACAGGGCG TCGAGGGCTG GATCGCCCAG AGCGAGATAT GGGGGGCCTA TCCGGGCGAG
GCCTTCAAGT AA
 
Protein sequence
MSFVMRHVIS RISALTMAAL LGAVLTASTA HAQAAKGPSG LPLPRFVSLK AKSVNLRIGP 
SVDYAVAFRY LKSGVPVEII QEYDNWRRIR DADGTEGWVN QALLSGDRTA MAAPWMRSKG
EGVFVNMRRD PQGTAPIVAR IEPGVMLHIG ECNGDWCHAE TQGVEGWIAQ SEIWGAYPGE
AFK