| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3355 |
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| Symbol | |
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| ID | 5324239 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 3554032 |
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| End bp | 3555498 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640792306 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001329011 |
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| Protein GI | 150398544 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGGCA AACGCGGAAA TGAAGGTCCT GGCAAGGGTG GTGCACGCGG TTTCACACCT
GCGCCTTCAA TACCCGCGGT CGAGCTGGCG GTTGTCGAGC GTCCCTCGGC CCCTGATTAT
GGAGAGCCGG CCGCTCCGCC ATCCCGGCCG CAGGCGGCAG CGCCCCCTCA GCGCCGGCGC
CCGGCGCGGG CAGAGGATTA CTACGACACG AAATCGCAGG TCTTCTCCGC GCTGATCGAC
ACGATCGACC TGTCGCAGCT CTCCAAGCTC GATATCGAGA GCGCGCGCGA GGAAATTCGC
GACATCGTCA ACGACATCAT CACCATCAAG AATTTCGCGA TGTCGATCTC GGAGCAGGAG
GAACTGCTCG ACGACATCTG CAACGACGTG CTCGGCTACG GACCGCTGGA GCCGCTGCTC
GCGCGCGACG ATATCGCCGA CATCATGGTC AACGGCGCCG GGCAAACCTT CATCGAAGTG
GGCGGGAAGG TCGAAGAATC GGAGATACGG TTCCGCGACA ACGGGCAACT CCTGTCGATC
TGCCAGCGCA TCGTCAGTCA GGTGGGCCGC CGCGTAGACG AGTCCAGCCC GATCTGCGAC
GCGCGTCTGC CGGATGGCTC GCGTGTCAAC GTCATCGCCC CGCCGCTCGC GATCGACGGC
ACGGCACTCA CGATCCGCAA GTTCAAAAAG GACAAGCTGA CGCTCGAGCA GCTGGTACGT
TTCGGCTCGG TCACACCGGA GGCCGCGGTG CTGCTGCAGA TCATCGGCCG CGTCCGCTGC
AACATCGTCA TCTCCGGCGG TACCGGCTCC GGCAAGACGA CGCTGCTCAA CTGCCTGACG
CGCTATATAG ACAGCAACGA GCGCATCATC ACCTGCGAAG ACTCCGCCGA ACTGCAATTG
CAGCAGCCGC ATGTGGTCCG TCTCGAGACT CGCCCGCCGA ACATCGAGGG CGAGGGCGAG
ATCACCATGC GCGACCTGGT GAAGAACTGC CTGCGCATGC GCCCGGAGCG CATCATCGTC
GGCGAGGTGC GCGGCCCGGA AGTCTTCGAT CTGCTGCAGG CGATGAACAC CGGCCATGAC
GGATCGATGG GAACCATCCA CGCGAACACG CCGCGCGAAT GCCTGAGCCG AATGGAATCG
ATGATCGCCA TGGGCGGTTA CACCCTGCCT GCCAGGACCG TGCGCGAAAT CATCTCCGGC
TCGGTGGACG TCATCATCCA GGCATCGCGC CTGCGCGACG GTTCGCGCCG GATCACCCAC
ATCACCGAGG TCGTCGGCAT GGAAGGCGAC GTAATCATCA CACAGGATCT GATGCGCTAC
GAGATCGACG GCGAGGATGC CAATGGCCGG ATTGTCGGCC GCCACGTTTC GACCGGGATA
GGCCGGCCGC ATTTCTGGGA CCGGGCCCGC TACTTCAACG AGGACAAGCG GCTCGCCGCG
ACACTCGATG CGATGGAAAA GCAATAG
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| Protein sequence | MFGKRGNEGP GKGGARGFTP APSIPAVELA VVERPSAPDY GEPAAPPSRP QAAAPPQRRR
PARAEDYYDT KSQVFSALID TIDLSQLSKL DIESAREEIR DIVNDIITIK NFAMSISEQE
ELLDDICNDV LGYGPLEPLL ARDDIADIMV NGAGQTFIEV GGKVEESEIR FRDNGQLLSI
CQRIVSQVGR RVDESSPICD ARLPDGSRVN VIAPPLAIDG TALTIRKFKK DKLTLEQLVR
FGSVTPEAAV LLQIIGRVRC NIVISGGTGS GKTTLLNCLT RYIDSNERII TCEDSAELQL
QQPHVVRLET RPPNIEGEGE ITMRDLVKNC LRMRPERIIV GEVRGPEVFD LLQAMNTGHD
GSMGTIHANT PRECLSRMES MIAMGGYTLP ARTVREIISG SVDVIIQASR LRDGSRRITH
ITEVVGMEGD VIITQDLMRY EIDGEDANGR IVGRHVSTGI GRPHFWDRAR YFNEDKRLAA
TLDAMEKQ
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