| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3238 |
|---|
| Symbol | trpA |
|---|
| ID | 5324117 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 3413036 |
|---|
| End bp | 3413875 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640792186 |
|---|
| Product | tryptophan synthase subunit alpha |
|---|
| Protein accession | YP_001328897 |
|---|
| Protein GI | 150398430 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0159] Tryptophan synthase alpha chain |
|---|
| TIGRFAM ID | [TIGR00262] tryptophan synthase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCAC GCATGGAGCA AAGGTTCGCC GATGTGGCGG CTGAAGGGCG CCCGGTTCTC
GTGACCTATT TCATGGGCGG CGACCCGGAT TTCGACACGT CGCTCGCGAT CATGAAGGCG
CTGCAGCAGG CCGGCGCCGA TATCATCGAA CTCGGCGTCC CCTTTTCCGA CCCGATGGCC
GATGGACCGG CGATCCAGCT CGCCGGTCAG CGTGCGCTCA AGGCCGGGCA GACGCTTGCC
AAGACGCTGG AGCTTGCCCG GCGTTTCCGG GCCGACGATC AGCGTACCCC CATCGTGCTG
ATGGGCTACT ACAATCCCAT CTACATCTAC GGCGTCGAGC GGTTTTTGAC GGACGCGCTC
GAGGCCGGCG TCGACGGCAT GATCGTCGTC GACCTGCCGC CGGAAATGGA CGACGAACTC
TGCATTCCGG CGCTCGCGAA GGGCATCAGC TTCATCCGCC TGGCTACACC GACGACGGAT
GACCGGCGTC TGCCCAAAGT CCTCGAAAAT ACGTCCGGTT TCGTGTATTA CGTGTCGATG
ACCGGTATCA CCGGCTCGGC GCTGCCGGAT ACGTCGCTGA TTGCCGGTGC CGTGGCGCGC
ATCAAGGCAC ATACCTCCTT GCCGGTCTGC GTCGGTTTCG GGGTGAAGAC GGCGGATCAT
GCACGCGCCA TTGGTGCAAC CGCCGATGGC GTCGTCGTCG GCACGGCCAT CGTCAATCAG
ATCGCGTCGA GTTTGACGGA AGAGGGCCGC GCAACGGAAG CGACGGTTCC GGGTGTCGAA
GCGCTCGTCA GAGGGCTTGC GGCCGGCGTA CGGGCGGCAC GACTCGCCGC AGCCGAATAA
|
|---|
| Protein sequence | MTARMEQRFA DVAAEGRPVL VTYFMGGDPD FDTSLAIMKA LQQAGADIIE LGVPFSDPMA
DGPAIQLAGQ RALKAGQTLA KTLELARRFR ADDQRTPIVL MGYYNPIYIY GVERFLTDAL
EAGVDGMIVV DLPPEMDDEL CIPALAKGIS FIRLATPTTD DRRLPKVLEN TSGFVYYVSM
TGITGSALPD TSLIAGAVAR IKAHTSLPVC VGFGVKTADH ARAIGATADG VVVGTAIVNQ
IASSLTEEGR ATEATVPGVE ALVRGLAAGV RAARLAAAE
|
|---|
| |