| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3192 |
|---|
| Symbol | |
|---|
| ID | 5324071 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 3363794 |
|---|
| End bp | 3364753 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640792140 |
|---|
| Product | heat shock protein HtpX |
|---|
| Protein accession | YP_001328851 |
|---|
| Protein GI | 150398384 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0501] Zn-dependent protease with chaperone function |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.349199 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTCA TGCGCACCGC AATGCTGCTA GCCTTCATGA CCGTCCTGTT CATGGCCGTC
GGCTATGTGA TCGGCGGCCG GGGTGGCATG ATGATCGCCC TCGTCATTGC CGCGGGCATG
AATTTCTTCT CCTATTGGAA TTCCGATCGG ATGGTGCTGC GGATGTACCG GGCGCAGGAG
GTCGATGAGC GAAGCGCCCC GGAATATTAC GGCATCGTGC GTGACCTCGC AAAGAATGCC
GGCCTGCCGA TGCCGCGCGT CTATGTCATC GACAGTCCCC AGCCGAACGC ATTCGCCACC
GGGCGCAATC CCGAAAACGC CGCGGTCGCC GCTTCGACGG GACTGCTGCA TTCGCTCTCC
TACGAGGAGG TCGCCGGGGT GATGGCGCAC GAGCTTGCCC ATATCCAGTA CCGCGATACC
CTGACGATGA CGATGACGGC AACGCTTGCC GGTGCGATTT CCATGCTCGG CAACTTTGCC
TTCTTTTTCG GCGGAAACCG CGAGAACAAC AATCCGCTCG GCTTTATCGG CGTGCTGATC
GCGATGATCG TCGCTCCGCT GGCGGCGGCG CTCGTGCAGA TGGCGATCAG CCGCACCCGC
GAATATTCCG CCGACCGGCG CGGCGCGGAG ATCTGCGGCA ACCCGCTCTG GCTTTCCTCG
GCGCTCCGCA AGATCGCCGG AGCGGCGCAT GTCGTTCACA ATCCCGATGC CGAGCGCAAT
CCTGCGACCG CGCATATGTT CATCATCAAT CCCCTCTCGG GCGAGCGGAT GGACAATCTG
TTCTCGACCC ATCCCAACAC CGAGAACCGG GTCGTGGCCC TCGAGAGAAT GGCCCGGGAG
ATGTCCACGG GGTCGACGGC ACCCGTTCGG CCTGATAATG CGGTGCGAAA ATCGCGCTCT
GTCCCGAGAA CCGGCTGGGG TCGCGGTGGT TCCGAACCGC CGAAAGGCCC CTGGTCCTGA
|
|---|
| Protein sequence | MNLMRTAMLL AFMTVLFMAV GYVIGGRGGM MIALVIAAGM NFFSYWNSDR MVLRMYRAQE
VDERSAPEYY GIVRDLAKNA GLPMPRVYVI DSPQPNAFAT GRNPENAAVA ASTGLLHSLS
YEEVAGVMAH ELAHIQYRDT LTMTMTATLA GAISMLGNFA FFFGGNRENN NPLGFIGVLI
AMIVAPLAAA LVQMAISRTR EYSADRRGAE ICGNPLWLSS ALRKIAGAAH VVHNPDAERN
PATAHMFIIN PLSGERMDNL FSTHPNTENR VVALERMARE MSTGSTAPVR PDNAVRKSRS
VPRTGWGRGG SEPPKGPWS
|
|---|
| |