Gene Smed_3191 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3191 
Symbol 
ID5324070 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3362382 
End bp3363794 
Gene Length1413 bp 
Protein Length470 aa 
Translation table11 
GC content65% 
IMG OID640792139 
ProductFmu (Sun) domain-containing protein 
Protein accessionYP_001328850 
Protein GI150398383 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0144] tRNA and rRNA cytosine-C5-methylases 
TIGRFAM ID[TIGR00563] ribosomal RNA small subunit methyltransferase RsmB 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.97576 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGAAG ACAGCAAGAA CGATTCTCAT CCGAAACGAA TCCGAGAACA CAGGCGCCCC 
GGATTGGGAG GGCCCAAGGC CGGCGCGCTT GCCCCGGCCA AACCGGGCTT GAAGAGCCGC
CAGGCAGCGG CGAAGATCCT TGCGGCGGTG GTCGACCGGA AAACGCCGCT CGACGGGATG
CTGGACCCGG AGCGGGGCAA CCCGGTCTAT CGTGAGTTGA ACGATGCCGA CCGCGCGCTG
GTGCGCGCCA TTCTGAACTC CGCACTGCGC CATCTGCCAC GCATCCGCGC GGCGATCGAT
TCCCTGCTGC AGACACCATT GCCTGAGGGT GCGCGGGCAC TCGAACATGT CCTGACCGTT
GCTGCCGCAC AAATTCTCTA TCTTGATGTT CCGGATCATT CCGCCGTCGA CCTCGCAGTG
GAACAGGCCC AGTCCGATCC GCGAAATCGC CGTTTCGCCA GCCTTGTCAA TGCGGTGCTG
CGGCGGCTTT CGCGTGAAAA GGAGGCGATT CTCGAACGTC TGCAACAGGT GCCGGCGATG
CCGGGCTGGT TCTTCGACAG GCTCGTCACC TGTTACGGAC GCGATCAAGC GGAGCGCATC
TCTGACGCGC AGCTCGTACC CGCCGCCATC GATGTCACCG TTAAATCCGA TGCAGCTTCC
TGGGCCGACC GGCTCAACGG CACCGTGTTG CCGACCGGTT CCGTTCGACT TCAGGATTTT
GACGGCTCCA TTCCGTCTCT GCCCGGTTTT TCGGAGGGCG GATGGTGGGT CCAGGATGCG
GCTGCCTCCA TTCCGGCGCG CCTCTTCGGA GATATTTCCG GCAGAAAGGT GGTCGACCTT
TGTGCCGCGC CCGGCGGCAA GACGGCGCAA CTCGTTCTCG CAGGGGCAAA GGTGATCGCG
CTGGATCAGT CTTCCAGCCG CCTCCGGCGA CTCAAGGCCA ACCTTGAGCG GCTTGGATTA
GAGAGCGCGA CGAAGGAGGC CGACATGGCC GATTTCCGGC CGGAAGAACT CTTCGACGCC
GCCCTTCTCG ACGCCCCCTG CTCGTCGACC GGCACCACCC GGCGGCATCC CGATGTGCTC
TGGACAAAAG GCCCTGATGA CGTCGAGAAG CTTGCCGGGC TGCAAGAGCG GCTGCTGCGG
CATGCACTCA CCCTGGTGAA GCCCGGAGGG CTTCTCGTCT TTTCCAACTG TTCGCTCGAC
CCGCGCGAGG GCGAGGAGGT CGTGGCGCGC GTCGTTGCCG ACGGCGGATG CGAGCGGGTG
CCGATCGACG CGGCCGCCTG GCCTGGGCTC GAACAGGCGA TTACCGCCCT CGGAGAATTC
CGGACGACAC CGGCGATGCT GTCCCTTGGA CCGCCTTTCG CCAGCGGTCT GGATGGTTTC
TATGCGGCCG TGTTGCGCCG GGCCGACGCC TGA
 
Protein sequence
MPEDSKNDSH PKRIREHRRP GLGGPKAGAL APAKPGLKSR QAAAKILAAV VDRKTPLDGM 
LDPERGNPVY RELNDADRAL VRAILNSALR HLPRIRAAID SLLQTPLPEG ARALEHVLTV
AAAQILYLDV PDHSAVDLAV EQAQSDPRNR RFASLVNAVL RRLSREKEAI LERLQQVPAM
PGWFFDRLVT CYGRDQAERI SDAQLVPAAI DVTVKSDAAS WADRLNGTVL PTGSVRLQDF
DGSIPSLPGF SEGGWWVQDA AASIPARLFG DISGRKVVDL CAAPGGKTAQ LVLAGAKVIA
LDQSSSRLRR LKANLERLGL ESATKEADMA DFRPEELFDA ALLDAPCSST GTTRRHPDVL
WTKGPDDVEK LAGLQERLLR HALTLVKPGG LLVFSNCSLD PREGEEVVAR VVADGGCERV
PIDAAAWPGL EQAITALGEF RTTPAMLSLG PPFASGLDGF YAAVLRRADA