Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_3175 |
Symbol | |
ID | 5324054 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 3338189 |
End bp | 3339232 |
Gene Length | 1044 bp |
Protein Length | 347 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640792123 |
Product | periplasmic binding protein/LacI transcriptional regulator |
Protein accession | YP_001328834 |
Protein GI | 150398367 |
COG category | [K] Transcription |
COG ID | [COG1609] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGAAAGG AGCGGGTCAC GGTTGTCGAC ATTGCGCGTG CCGCCGGCGT GTCGAAATCG ACCGTGTCGC TCGTCCTGCA GGGAAGTCCG CTCGTCAATG AAGCGACGCG GGCAAAGGTC AATGCGGCGA TCCGCGAGCT TGGCTATGTC TATAATCGCA GCGCCGCCAA TCTGCGCCAG GCGAGATCGA AGATCATCGG CATCGTCGTC AACGATCTCA CGAACAGTTT CTTTGCGGAG CTCGCGGTCG GCGTCGACGA GGTCGTGCAG TCCGCCGGCT TCGTGCAGTT TCTCGCCAAT ACCAGCGAGA AGCTGGAGCG CCAGCGTGAG GTCATCGCCT CTATGCGCGA GCACGGCGTG TCGGGCCTCA TCATATCGCC GGCGCGCGGC ACGGAAGTCG GCGATCTCGC ACCGCTCGGC GCCGCCGGGA TTCCGGTTGT ACTCGTCGTG CGCGACATTC CCGGAGCCGA TGTGTCGTCG CTGATATCAG ACAATCACGC TGGCGCCGTT GCCGCCGTGC GGCATCTGGT CGAGCGCGGC CATCGCCGCG TGGCCTTCCT GGGCGGCTTT GCCGATACAG CGGTTTTCGA AGCGCGAATG CGCGGCTATC GCGATGCCTT GCAAGAGGCG GGTCTGGATA CCTCCGAGAC TCTGACCATC GGCTCGGCGC CGTCTCGCGC CGGCGGTGTC ACGGCAATAG AGCAGGCGAT GATGCTGAAG GAGCGGCCGA CCGCGGCGCT CTGCTTCAAC GATGCCGTCG CCTTCGGTGT CTGCGACGGC TTGCGCGCGC GTCGGCTGGA GCCCGGCGAA GACTTCGCGG TGATCGGTTT CGACGACGTG ATCGAAGCGA AAACCGCGGT GCCGGCGCTG ACCACGGTCT CTGTCGATCC GCAGGGCATG GGCGAGCGGG CGGCGGAGCT GCTTCTGAAA CAGATCAATA GCGGCCGTGT CGAGCCGGAA GCGATCGTCA GCCCGGTACG GCTCGCCATC CGCCAGAGCT GCGGCGCAGC CGTCGGACGC AGGATGAAGG AGATTTCGTC ATGA
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Protein sequence | MGKERVTVVD IARAAGVSKS TVSLVLQGSP LVNEATRAKV NAAIRELGYV YNRSAANLRQ ARSKIIGIVV NDLTNSFFAE LAVGVDEVVQ SAGFVQFLAN TSEKLERQRE VIASMREHGV SGLIISPARG TEVGDLAPLG AAGIPVVLVV RDIPGADVSS LISDNHAGAV AAVRHLVERG HRRVAFLGGF ADTAVFEARM RGYRDALQEA GLDTSETLTI GSAPSRAGGV TAIEQAMMLK ERPTAALCFN DAVAFGVCDG LRARRLEPGE DFAVIGFDDV IEAKTAVPAL TTVSVDPQGM GERAAELLLK QINSGRVEPE AIVSPVRLAI RQSCGAAVGR RMKEISS
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