Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_3105 |
Symbol | |
ID | 5323984 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 3251309 |
End bp | 3251971 |
Gene Length | 663 bp |
Protein Length | 220 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640792055 |
Product | thiamine pyrophosphokinase |
Protein accession | YP_001328766 |
Protein GI | 150398299 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1564] Thiamine pyrophosphokinase |
TIGRFAM ID | [TIGR01378] thiamine pyrophosphokinase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCTTAG CGATGACCCG ACCACCCTTC ACAATCCTTC TCGGCGGTGC GCTGATGCCG ACCGGCCGTC TTGCTCGACA GCTCGAAGGC AGCCGGTTTG TCGCGGCCGA CGGCGGCATG CGCCACGCGA GGACGCTCGG GATCGTGCCC GATCTCTGGG TGGGCGATTT CGATTCGACC GACGACGCTC TTCTGGCGGA GTTTGCGGAT GTCCCGCGGG AACGCCATCC CGCCGCCAAG AACGCGACGG ATGGCGAGAT CGCCGTCGAG GCGGCTGTCG GGCGTGGCGC GTCCTCGCTG ATCTTCGCGG GCGGGCTCGG CGGCGCGCGC AGCGACCACG CCTTCCTGCA TCTCCTCGGC ACCGTAGCTC TTGCCGAGAG CGGGATTGAC GTGATGATGA CCTCCGGAGA AGAGGAAGCC TATCCGCTGC TGCCCGGTTC GCAGGAGATC GAGCTACCGG AAGGCAGCCT TTTCTCGATT CTGGGCTTTT CGGATCTTGA TGGCCTCTCG ATCGAGAACG TGCGGTATCC CCTCAAGGAG TTCCATTTGC CCTTCGGCTC CTCGCGCACC ATTTCGAACA TCGCGGACGG AACGGTCCGC TTCACCCTGA AATCCGGCCG GGCCGTCATC CTCGCCCGGC CCTATGATCT TTCCGGAGCC TGA
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Protein sequence | MGLAMTRPPF TILLGGALMP TGRLARQLEG SRFVAADGGM RHARTLGIVP DLWVGDFDST DDALLAEFAD VPRERHPAAK NATDGEIAVE AAVGRGASSL IFAGGLGGAR SDHAFLHLLG TVALAESGID VMMTSGEEEA YPLLPGSQEI ELPEGSLFSI LGFSDLDGLS IENVRYPLKE FHLPFGSSRT ISNIADGTVR FTLKSGRAVI LARPYDLSGA
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