Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_3059 |
Symbol | |
ID | 5323938 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 3208066 |
End bp | 3209475 |
Gene Length | 1410 bp |
Protein Length | 469 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640792009 |
Product | isopropylmalate isomerase large subunit |
Protein accession | YP_001328720 |
Protein GI | 150398253 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0065] 3-isopropylmalate dehydratase large subunit |
TIGRFAM ID | [TIGR00170] 3-isopropylmalate dehydratase, large subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGCAC CGCGTACTCT CTACGACAAG ATCTGGGACG ATCATCTGGT CGACAGCCAG GCCGACGGAA CCTGTCTTCT CTACATCGAC CGTCACCTCG TTCATGAGGT GACGAGTCCT CAGGCCTTCG AGGGCCTGCG CATTGCCGGC CGCAAGGTTC GAGCCCCGGA AAAGACGCTC GCAGTCGTCG ATCACAACGT CCCGACGTCG CCGGACCGCC ATCTCGGCAT CAAGAACGAG GAAAGCCGCA TTCAGGTAGA GGCACTCGCA AGGAATGCGG CGGATTTCGG CGTCGAATAT TATTCGGAGA GCGACAAGCG CCAGGGGATC GTTCACATCG TCGGCCCCGA GCAGGGTTTC ACCCTGCCGG GCATGACGAT CGTCTGTGGC GACAGCCACA CTTCGACGCA TGGCGCCTTC GGTGCCCTGG CGCACGGCAT TGGCACGTCC GAGGTCGAGC ACGTTCTGGC CACGCAGACG CTGATCCAGA AAAAGGCAAA GAACATGCTG GTGCGCGTAG ACGGCCAGTT GCCGCCGGGC GTCACCGCCA AGGACATCAT CCTTGCCATC ATCGGTGAAA TCGGAACGGC GGGCGGCACC GGCCACGTTA TCGAATTCGC CGGCGAAGCC ATCCGCTCGC TGTCGATGGA AGGCCGGATG ACCGTCTGCA ACATGACGAT CGAAGGCGGC GCCCGTGCGG GCCTGATCGC TCCGGACGAA ACGACTTTCG CTTATATCGA GGACAGGCCG CGCGCACCGA AGGGTGAGGC TTGGGATATG GCGGTCGAAT ACTGGAAGAC GCTGCATACG GACGAAGGCG CCCATTACGA CCGCGTCGTC GTTCTCGATG CGGCGAACCT GCCGCCGATC GTCTCCTGGG GCTCCTCGCC GGAAGACGTC GTTTCCGTCC AGGGCGTCGT TCCCAATCCG GACGAGATCC CGGACGAGAC GAAGCGCACC TCGAAGTGGC GCGCGCTCGA CTATATGGGG CTGAAGCCCG GCACCAGGAT CACCGATATC GCGATCGACC GGGTGTTCAT CGGCTCCTGC ACCAATGGCC GTATCGAGGA CCTGCGCGCC GTCGCCAAGG TCGTCGAAGG CCGCAAGGTC GCCCCGACGG TTTCGGCGAT GATCGTTCCC GGTTCCGGCC TCGTCAAGGA ACAGGCGGAA GTGGAAGGCC TGGACAAGAT CTTCAGGGAA GCGGGTTTCG ACTGGCGCGA GCCCGGCTGC TCCATGTGCC TGGCGATGAA CGACGACCGG CTGAAGCCCG GCGAACGTTG TGCCTCCACA TCGAACCGCA ACTTCGAAGG CCGCCAGGGC TTCAAAGGGC GCACGCATCT GCTTTCTCCG GCAATGGCGG CTGCAGCGGC GATCGCCGGG CATTTTGTCG ACATTCGCGA ATGGAAATAG
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Protein sequence | MSAPRTLYDK IWDDHLVDSQ ADGTCLLYID RHLVHEVTSP QAFEGLRIAG RKVRAPEKTL AVVDHNVPTS PDRHLGIKNE ESRIQVEALA RNAADFGVEY YSESDKRQGI VHIVGPEQGF TLPGMTIVCG DSHTSTHGAF GALAHGIGTS EVEHVLATQT LIQKKAKNML VRVDGQLPPG VTAKDIILAI IGEIGTAGGT GHVIEFAGEA IRSLSMEGRM TVCNMTIEGG ARAGLIAPDE TTFAYIEDRP RAPKGEAWDM AVEYWKTLHT DEGAHYDRVV VLDAANLPPI VSWGSSPEDV VSVQGVVPNP DEIPDETKRT SKWRALDYMG LKPGTRITDI AIDRVFIGSC TNGRIEDLRA VAKVVEGRKV APTVSAMIVP GSGLVKEQAE VEGLDKIFRE AGFDWREPGC SMCLAMNDDR LKPGERCAST SNRNFEGRQG FKGRTHLLSP AMAAAAAIAG HFVDIREWK
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