Gene Smed_3059 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3059 
Symbol 
ID5323938 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3208066 
End bp3209475 
Gene Length1410 bp 
Protein Length469 aa 
Translation table11 
GC content63% 
IMG OID640792009 
Productisopropylmalate isomerase large subunit 
Protein accessionYP_001328720 
Protein GI150398253 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0065] 3-isopropylmalate dehydratase large subunit 
TIGRFAM ID[TIGR00170] 3-isopropylmalate dehydratase, large subunit 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGCAC CGCGTACTCT CTACGACAAG ATCTGGGACG ATCATCTGGT CGACAGCCAG 
GCCGACGGAA CCTGTCTTCT CTACATCGAC CGTCACCTCG TTCATGAGGT GACGAGTCCT
CAGGCCTTCG AGGGCCTGCG CATTGCCGGC CGCAAGGTTC GAGCCCCGGA AAAGACGCTC
GCAGTCGTCG ATCACAACGT CCCGACGTCG CCGGACCGCC ATCTCGGCAT CAAGAACGAG
GAAAGCCGCA TTCAGGTAGA GGCACTCGCA AGGAATGCGG CGGATTTCGG CGTCGAATAT
TATTCGGAGA GCGACAAGCG CCAGGGGATC GTTCACATCG TCGGCCCCGA GCAGGGTTTC
ACCCTGCCGG GCATGACGAT CGTCTGTGGC GACAGCCACA CTTCGACGCA TGGCGCCTTC
GGTGCCCTGG CGCACGGCAT TGGCACGTCC GAGGTCGAGC ACGTTCTGGC CACGCAGACG
CTGATCCAGA AAAAGGCAAA GAACATGCTG GTGCGCGTAG ACGGCCAGTT GCCGCCGGGC
GTCACCGCCA AGGACATCAT CCTTGCCATC ATCGGTGAAA TCGGAACGGC GGGCGGCACC
GGCCACGTTA TCGAATTCGC CGGCGAAGCC ATCCGCTCGC TGTCGATGGA AGGCCGGATG
ACCGTCTGCA ACATGACGAT CGAAGGCGGC GCCCGTGCGG GCCTGATCGC TCCGGACGAA
ACGACTTTCG CTTATATCGA GGACAGGCCG CGCGCACCGA AGGGTGAGGC TTGGGATATG
GCGGTCGAAT ACTGGAAGAC GCTGCATACG GACGAAGGCG CCCATTACGA CCGCGTCGTC
GTTCTCGATG CGGCGAACCT GCCGCCGATC GTCTCCTGGG GCTCCTCGCC GGAAGACGTC
GTTTCCGTCC AGGGCGTCGT TCCCAATCCG GACGAGATCC CGGACGAGAC GAAGCGCACC
TCGAAGTGGC GCGCGCTCGA CTATATGGGG CTGAAGCCCG GCACCAGGAT CACCGATATC
GCGATCGACC GGGTGTTCAT CGGCTCCTGC ACCAATGGCC GTATCGAGGA CCTGCGCGCC
GTCGCCAAGG TCGTCGAAGG CCGCAAGGTC GCCCCGACGG TTTCGGCGAT GATCGTTCCC
GGTTCCGGCC TCGTCAAGGA ACAGGCGGAA GTGGAAGGCC TGGACAAGAT CTTCAGGGAA
GCGGGTTTCG ACTGGCGCGA GCCCGGCTGC TCCATGTGCC TGGCGATGAA CGACGACCGG
CTGAAGCCCG GCGAACGTTG TGCCTCCACA TCGAACCGCA ACTTCGAAGG CCGCCAGGGC
TTCAAAGGGC GCACGCATCT GCTTTCTCCG GCAATGGCGG CTGCAGCGGC GATCGCCGGG
CATTTTGTCG ACATTCGCGA ATGGAAATAG
 
Protein sequence
MSAPRTLYDK IWDDHLVDSQ ADGTCLLYID RHLVHEVTSP QAFEGLRIAG RKVRAPEKTL 
AVVDHNVPTS PDRHLGIKNE ESRIQVEALA RNAADFGVEY YSESDKRQGI VHIVGPEQGF
TLPGMTIVCG DSHTSTHGAF GALAHGIGTS EVEHVLATQT LIQKKAKNML VRVDGQLPPG
VTAKDIILAI IGEIGTAGGT GHVIEFAGEA IRSLSMEGRM TVCNMTIEGG ARAGLIAPDE
TTFAYIEDRP RAPKGEAWDM AVEYWKTLHT DEGAHYDRVV VLDAANLPPI VSWGSSPEDV
VSVQGVVPNP DEIPDETKRT SKWRALDYMG LKPGTRITDI AIDRVFIGSC TNGRIEDLRA
VAKVVEGRKV APTVSAMIVP GSGLVKEQAE VEGLDKIFRE AGFDWREPGC SMCLAMNDDR
LKPGERCAST SNRNFEGRQG FKGRTHLLSP AMAAAAAIAG HFVDIREWK