| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3049 |
|---|
| Symbol | |
|---|
| ID | 5323928 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 3197678 |
|---|
| End bp | 3198562 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640791999 |
|---|
| Product | acyl-CoA thioesterase II |
|---|
| Protein accession | YP_001328710 |
|---|
| Protein GI | 150398243 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1946] Acyl-CoA thioesterase |
|---|
| TIGRFAM ID | [TIGR00189] acyl-CoA thioesterase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCGCC TCACCGAGAC TGCCACGCCA ATGGACGCGC TGCTTGCGAT ACTCGACCTC
GAAAAGCTCG AAGAGAACCT CTTCAGGGGC TTAAGCCCGC AGGTCGGCTG GCAGCGGGTC
TTCGGCGGCC AGGTGATCGG CCAGGCGCTG GTCGCCGCCC AGCGCACGGT CGAAGGAGGC
CGTTACGTCC ATTCACTGCA CGCCTATTTC ATGCGGCCGG GCGATCCGTC GGTCCCTATC
GTCTACGAAG TTGACCGGAT CCGCGACGGC TCGAGCTTCG CCACGCGGCG CGTGGCGGCG
ATCCAGCACG GCAAGGCCAT CTTCGCCATG TCGGCCTCCT TCCAATACGA CGAGGATGGA
TTCGAACACC AGTTCGACAT GCCGGACGTG CCTATGCCGG AGACGCTGCC GGGCGAGCAG
GAACTCAAGG AGAAGTTCCT CGTCCACGCG CCGGAGGCGA TCCGCCGTTA TTGGGAGCGG
CCGCGGCCGA TCGAAATCCG CCCCGTCTCG CTCGAGCATT ATTTCTCACG AGCCAAGGCA
TCGCCGAAGC AGGACGTCTG GGTGAAAGCG GTCGGCGCGG TGCCTGACGA GCGCCATCTG
CAGGCCGCCG TCCTTGCCTA TCTTTCCGAC ATGACGCTTC TCGACACATC GCTTTACGCG
CACGGCACGT CGGTGTTCGA CCGCAGCCTC CAGGTCGCGA GCCTCGACCA CGCAATGTGG
TTCCACCGGC CCTCGAAGAT GGACGATTGG CTGCTCTACA CCCAGGACAG CCCGAGTGCG
CACGGCGCGC GCGGCATGAC CCGTGGCAGC CTTTTCGATC GCTCCGGCGT TCTGATTGCC
TCTGTGGCGC AGGAAGGATT GATCCGCAAA AAGGCAACTG CATAA
|
|---|
| Protein sequence | MSRLTETATP MDALLAILDL EKLEENLFRG LSPQVGWQRV FGGQVIGQAL VAAQRTVEGG
RYVHSLHAYF MRPGDPSVPI VYEVDRIRDG SSFATRRVAA IQHGKAIFAM SASFQYDEDG
FEHQFDMPDV PMPETLPGEQ ELKEKFLVHA PEAIRRYWER PRPIEIRPVS LEHYFSRAKA
SPKQDVWVKA VGAVPDERHL QAAVLAYLSD MTLLDTSLYA HGTSVFDRSL QVASLDHAMW
FHRPSKMDDW LLYTQDSPSA HGARGMTRGS LFDRSGVLIA SVAQEGLIRK KATA
|
|---|
| |