Gene Smed_2941 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2941 
SymbolsucA 
ID5323818 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3087097 
End bp3090093 
Gene Length2997 bp 
Protein Length998 aa 
Translation table11 
GC content62% 
IMG OID640791892 
Product2-oxoglutarate dehydrogenase E1 component 
Protein accessionYP_001328605 
Protein GI150398138 
COG category[C] Energy production and conversion 
COG ID[COG0567] 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes 
TIGRFAM ID[TIGR00239] 2-oxoglutarate dehydrogenase, E1 component 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.196108 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAAGGC AAGAGGCCAA CGAGCAATTT CAGCTCACAT CCTTTCTGGA CGGCGCCAAT 
GCCGCCTATA TCGAGCAGCT CTATGCGCGC TATGAAGCAG ATCCCGGATC CGTTTCGGCC
GAGTGGCAAT CCTTCTTCAA GGCGCTTGCC GAGCGGCCCG AAGATGTGGT GAGAGCGGCC
AAGGGCGCCT CCTGGAAGAA GCCGAACTGG CCGATCCCCG CCAATGGCGA ACTCGTTTCG
GCCCTCGACG GCGACTGGGG CACGGTCGAG AAGGTCATCG AAAAGAAGGT CAAGGCCAAG
GCGGAGGAAG CCTCCGCCGC AACCGGCGTC CCGCTCAGCG AAGCCGAGGT GCATCAGTCG
ACGCGCGATT CCGTCCGCGC CATCATGATG ATCCGCGCCT ATCGCATGCG CGGCCACCTG
CATGCCAAGC TCGACCCGCT CGGCCTGGCC GATCCCGTCG AGGATTACGA CGAACTCTCC
CCGAAGACCT ACGGCTTCGA AGAGAAGGAC TACGACCGCA AGATCTTCAT CGACAACGTG
CTCGGCCTCG AATATGCGAC CGTGCGCGAG ATGGTCGAGC TGCTCGAGCG GACCTATTGT
TCGACGATCG GCGTCGAATT CATGCATATC TCCAACCCGG AAGAGAAGGG CTGGATACAG
GAACGCATCG AAGGTCCGGA CAAGGGCGTC GAATTCACCC CAGAGGGCAA GAAGGCGATC
CTGCAGAAGC TCATCGAAGC GGAGGGCTTC GAGCAGTTCA TCGACGTCAA GTACAAGGGC
ACCAAGCGTT TCGGCGTTGA TGGCGGCGAA TCCCTGATCC CCGCGCTCGA GCAGATCATC
AAGCGCGGCG GCCAGCTCGG CCTGAAGGAG ATCGTCCTGG GTATGGCGCA TCGCGGCCGT
CTCAACGTTC TCTCCCAGGT CATGGCCAAG CCGCACCGCG CCATCTTCCA CGAGTTCAAG
GGCGGGTCCT ACACGCCCGA CGATGTGGAA GGCTCCGGCG ACGTCAAGTA TCACCTCGGC
GCTTCCTCCG ACCGCGAATT CGACGGCAAC AAGGTCCACC TGTCGCTGAC CGCAAACCCG
TCCCATCTCG AAATCGTCAA TCCGGTCGTC ATGGGCAAGG CGCGCGCCAA GCAGGATCAG
ATGGCGACCG TATTCGAAGG CGACATCATA CCGCTGCGCG AACGCGTCAA GGTCATGCCG
TTGATCCTGC ACGGCGACGC GGCCTTTGCC GGCCAGGGTG TGGTCGCCGA GATTCTCGGC
CTATCGGGCC TGCGCGGGCA TCGTGTCGGC GGCACCGTCC ACTTCATCAT CAACAACCAG
ATCGGCTTCA CCACGAACCC GGCCTTCTCC CGTTCCTCGC CCTATCCGTC CGACGTGGCG
AAGATGATAG AAGCGCCCAT CTTCCACGTG AACGGCGACG ATCCGGAAGC GGTGGTCTAT
GCCGCCAAGG TCGCGACCGA ATTCCGGATG AAGTTCCACA AGCCTGTCGT CATCGACATG
TTCTGCTACC GGCGGTTCGG TCACAATGAG GGCGACGAGC CGGCCTTCAC GCAGCCGAGG
ATGTACAAGG CCATCCGCTC GCACAAGACG GTCGTCCAGC TCTATTCGGA CCGGCTGATT
GCCGAGGGCC TGATCAGCGA CGGCGAAGTC GAGAAGATGA AGGCCGACTG GCGCGCCCAT
CTCGAACAGG AATTCGAGGC CGGCCAGTCC TACAAGCCGA ACAAGGCCGA CTGGCTCGAC
GGTGCCTGGT CGGGTCTGCG CACGGCCGAC AACCAGGATG AGCAGCGGCG CGGGCGGACC
TCGGTCCCTA TGAAGCAGCT GAAGGAAATC GGCCGTAAGC TTTCCGAAAT CCCGGACGGC
TTCAGCGCGC ATCGCACCAT CCAGCGCTTC ATGGAGAACC GCGCCAACAT GGTCCAGACC
GGCGAGGGCA TCGACTGGGC GATGGCGGAA GCGCTCGCCT TCGGTACGCT CGTGACGGAG
GGCACCAAGA TTCGCCTTTC CGGCCAGGAT TGCGAGCGCG GCACCTTCTC GCAACGCCAT
TCGGTTCTCT ACGATCAGGA GACCGAGGAG CGCTACATTC CGCTTGCCAA CCTGGCACCG
ACGCAGGCTC GATACGAGGT CATCAACTCG ATGCTCTCCG AAGAGGCAGT GCTCGGCTTC
GAGTACGGCT ATTCGCTCGC CCGCCCGAAC GCGCTGACAC TGTGGGAAGC CCAGTTCGGC
GACTTCGCCA ATGGCGCACA GGTGGTTTTC GACCAGTTCG TCTCGTCGGG CGAGCGCAAG
TGGCTGCGCA TGTCGGGTCT CGTCTGCCTG CTGCCGCACG GCTATGAGGG GCAGGGACCG
GAGCATTCCT CCGCCCGCCT CGAGCGCTTC CTTCAGCTTT GCGCGGAAGA CAACATGCAG
GTCGCCAACG TTACGACCCC GGCGAACTAC TTTCATATTC TGCGCCGGCA GGTAAAGCGC
GACTTCCGCA AGCCGCTGAT CCTGATGACT CCGAAGTCGC TTCTGCGTCA CAAGAGGGCG
GTCTCCAGCC TGTCGGAAAT GGCCGGCGAG AGCTCGTTCC ATCGTCTCCT TTGGGACGAT
GCAGAGGTCA TCAAGGACGG GCCGATCAAG CTGCAGAAGG ATTCGAAGAT CCGCCGCGTG
GTCCTGTGCT CGGGCAAGGT CTATTACGAT CTGCTGGAAG AGCGCGAGAA GCGCGGGATA
GACGACATCT ACCTGCTGCG CGTCGAACAG CTCTATCCGT TCCCGGCAAA GGCGCTGATC
AACGAACTCA GCCGCTTCCG CAATGCGGAG ATGGTCTGGT GCCAGGAAGA GCCGAAGAAC
ATGGGCGCCT GGTCGTTCAT CGATCCCTAT CTAGAATGGG TACTTGCCCA TATCGATGCC
AAGTACCAGC GGGTGCGCTA TACCGGCCGT CCTGCCGCCG CTTCGCCGGC TACCGGCCTG
ATGTCCAAGC ATCTGGCGCA GCTTGCCGCC TTCCTCGAGG ACGCGCTGGG GGGCTGA
 
Protein sequence
MTRQEANEQF QLTSFLDGAN AAYIEQLYAR YEADPGSVSA EWQSFFKALA ERPEDVVRAA 
KGASWKKPNW PIPANGELVS ALDGDWGTVE KVIEKKVKAK AEEASAATGV PLSEAEVHQS
TRDSVRAIMM IRAYRMRGHL HAKLDPLGLA DPVEDYDELS PKTYGFEEKD YDRKIFIDNV
LGLEYATVRE MVELLERTYC STIGVEFMHI SNPEEKGWIQ ERIEGPDKGV EFTPEGKKAI
LQKLIEAEGF EQFIDVKYKG TKRFGVDGGE SLIPALEQII KRGGQLGLKE IVLGMAHRGR
LNVLSQVMAK PHRAIFHEFK GGSYTPDDVE GSGDVKYHLG ASSDREFDGN KVHLSLTANP
SHLEIVNPVV MGKARAKQDQ MATVFEGDII PLRERVKVMP LILHGDAAFA GQGVVAEILG
LSGLRGHRVG GTVHFIINNQ IGFTTNPAFS RSSPYPSDVA KMIEAPIFHV NGDDPEAVVY
AAKVATEFRM KFHKPVVIDM FCYRRFGHNE GDEPAFTQPR MYKAIRSHKT VVQLYSDRLI
AEGLISDGEV EKMKADWRAH LEQEFEAGQS YKPNKADWLD GAWSGLRTAD NQDEQRRGRT
SVPMKQLKEI GRKLSEIPDG FSAHRTIQRF MENRANMVQT GEGIDWAMAE ALAFGTLVTE
GTKIRLSGQD CERGTFSQRH SVLYDQETEE RYIPLANLAP TQARYEVINS MLSEEAVLGF
EYGYSLARPN ALTLWEAQFG DFANGAQVVF DQFVSSGERK WLRMSGLVCL LPHGYEGQGP
EHSSARLERF LQLCAEDNMQ VANVTTPANY FHILRRQVKR DFRKPLILMT PKSLLRHKRA
VSSLSEMAGE SSFHRLLWDD AEVIKDGPIK LQKDSKIRRV VLCSGKVYYD LLEEREKRGI
DDIYLLRVEQ LYPFPAKALI NELSRFRNAE MVWCQEEPKN MGAWSFIDPY LEWVLAHIDA
KYQRVRYTGR PAAASPATGL MSKHLAQLAA FLEDALGG