Gene Smed_2936 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2936 
Symbol 
ID5323813 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3082285 
End bp3083691 
Gene Length1407 bp 
Protein Length468 aa 
Translation table11 
GC content63% 
IMG OID640791887 
Productdihydrolipoamide dehydrogenase 
Protein accessionYP_001328600 
Protein GI150398133 
COG category[C] Energy production and conversion 
COG ID[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 
TIGRFAM ID[TIGR01350] dihydrolipoamide dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCTATG ATCTCATCGT TATCGGAAGC GGCCCCGGCG GCTATGTCTG CGCCATCAAG 
GCGGCGCAGC TGGGCATGAA GGTTGCCGTG GTCGAGAAGC GCAGCACCTA TGGCGGTACC
TGCCTGAATG TAGGCTGCAT CCCCTCCAAG GCGCTGCTGC ATGCTTCCGA AATGTTCCAT
GTCGCCGAGC ACGGGCTTGA CGCCCTGGGC GTCGAGGTCG CAACCCCGAA GCTCAACCTT
CAGAAGATGA TGGCGCACAA GGACGCGACC GTTAAGTCCA ACGTCGACGG AGTCGCCTTC
CTCTTCAAGA AGAACAAGAT CGACGGATTT CAGGGCCTGG GCAAAGTCCT CGGCCAGGGC
AAGGTTGCCG TTGCGAACGA GAAGGGCGAG GAGCAGGTGC TCGAGGCGAA GAATGTCGTT
ATCGCCACCG GTTCGGACGT CGCCGGCATT CCCGGGGTAG AGGTCCCTTT CGATGAAAAG
ATCATCGTCT CCTCGACCGG GGCGCTCGCG CTCGAAAAGG TCCCCGCGAG CATGATCGTC
GTCGGCGGCG GCGTCATCGG TCTCGAGCTC GGCTCGGTCT GGGCGCGCCT CGGCGCCAAG
GTGACGGTGG TCGAATATCT CGACACCATT CTCGGTGGCA TGGACGGCGA AGTCGCCAAG
CAGCTCCAGC GGATGCTGAC GAAACAGGGC CTCGACTTCA AGCTCGGCGC AAAAGTCACC
GGAGTGGTGA AGTCTGACGA GGGTGCGAAG GTCACCTTCG AGCCGGTGAA GGGCGGCGAG
GCGACGACGC TCGATGCCGA AGTCGTGCTC ATCGCTACCG GCCGCAAGCC CTCCACGGAA
GGTTTGGGCC TCGCCAAGGC GGGCGTCGTT CTCGATCAGC GTGGCCGCGT CGAGATCGAC
CAGCACTTTC AGACGAGCAT CACCGGCGTC TACGCGATCG GTGATGTCGT GCGCGGTCCG
ATGCTGGCCC ACAAGGCCGA GGATGAAGGC ATCGCCGTCG CGGAGATCAT CGCCGGCCAG
GCCGGCCACG TGAACTACGA CGTCATCCCG GGTGTGGTCT ATACCCAGCC CGAGGTTGCC
TCCGTCGGCA GGACCGAGGA AGAGCTGAAG GCCGCAGGCG TTGCCTATAA GGTCGGAAAA
TTCCCCTTTA CCGCCAACGG CCGCGCCCGC GCCATGCTGC AAACGGACGG TTTCGCGAAG
ATCCTGGCGG ACAAGGAGAC CGACCGCGTC CTTGGCGGCC ACATCATCGG CTTCGGCGCC
GGAGAGATGA TTCACGAGAT CGCCGTGCTG ATGGAATTCG GCGGATCGTC CGAAGACCTC
GGCCGCACCT GCCACGCCCA TCCGACCATG TCGGAAGCGG TGAAGGAAGC GGCGCTTTCC
ACCTTCTTCA AGCCGATCCA TATGTGA
 
Protein sequence
MAYDLIVIGS GPGGYVCAIK AAQLGMKVAV VEKRSTYGGT CLNVGCIPSK ALLHASEMFH 
VAEHGLDALG VEVATPKLNL QKMMAHKDAT VKSNVDGVAF LFKKNKIDGF QGLGKVLGQG
KVAVANEKGE EQVLEAKNVV IATGSDVAGI PGVEVPFDEK IIVSSTGALA LEKVPASMIV
VGGGVIGLEL GSVWARLGAK VTVVEYLDTI LGGMDGEVAK QLQRMLTKQG LDFKLGAKVT
GVVKSDEGAK VTFEPVKGGE ATTLDAEVVL IATGRKPSTE GLGLAKAGVV LDQRGRVEID
QHFQTSITGV YAIGDVVRGP MLAHKAEDEG IAVAEIIAGQ AGHVNYDVIP GVVYTQPEVA
SVGRTEEELK AAGVAYKVGK FPFTANGRAR AMLQTDGFAK ILADKETDRV LGGHIIGFGA
GEMIHEIAVL MEFGGSSEDL GRTCHAHPTM SEAVKEAALS TFFKPIHM