| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2924 |
|---|
| Symbol | |
|---|
| ID | 5323801 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 3068490 |
|---|
| End bp | 3070019 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640791875 |
|---|
| Product | F0F1 ATP synthase subunit alpha |
|---|
| Protein accession | YP_001328588 |
|---|
| Protein GI | 150398121 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0056] F0F1-type ATP synthase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00962] proton translocating ATP synthase, F1 alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.363319 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATATCC GCGCCGCGGA AATTTCCGCT ATTCTTAAAG ATCAGATCAA AAATTTCGGC
CAGGAAGCGG AAGTTTCCGA AGTGGGTCAG GTGCTTTCCG TCGGTGACGG TATTGCCCGC
GTCTACGGCC TCGACAACGT TCAGGCAGGC GAGATGGTCG AATTCCCGGG CGGAATTCGC
GGCATGGCGC TGAACCTGGA AGCCGACAAT GTCGGCGTGG TCATCTTCGG TTCCGACCGT
GACATCAAGG AAGGTGACAC CGTCAAGCGG ACCGGAGCCA TCGTGGACGT TCCGGTCGGC
CCGGAACTGC TCGGCCGCGT CGTGGACGCG CTCGGCAATC CGATCGACGG CAAGGGCCCG
ATCAATGCCA AGCAGCGTGC CCGCGTGGAC GTCAAGGCGC CCGGCATCAT CCCGCGCAAG
TCGGTTCACG AGCCGATGTC GACCGGCCTC AAGGCCATCG ACGCACTGAT CCCGGTTGGT
CGCGGCCAGC GCGAGCTCGT CATCGGCGAT CGCCAGACCG GCAAGACCGC CATCATTCTC
GACACGATCC TCAACCAGAA GGCCATTCAC GACAATGGGC CGGAAGGCGA CAAGCTCTAT
TGCGTCTATG TCGCGATCGG CCAGAAGCGC TCGACGGTCG CCCAGTTCGT GAAGGTGCTC
GAGGAGCGCG GCGCGCTACA GTATTCGATC ATCGTTGCTG CGACCGCTTC CGATGCCGCA
CCGATGCAGT ACCTGGCGCC GTTTGCCGGT TGCACGATGG GCGAATATTT CCGTGACAGC
GGCAAGCACG CCCTGATCGG TTATGACGAT CTCTCCAAGC AGGCCGTCGC CTACCGTCAG
ATGTCACTGC TGCTCCGCCG CCCGCCGGGC CGCGAAGCCT ATCCCGGCGA CGTCTTCTAC
CTGCATTCGC GCCTGCTGGA GCGTGCTGCA AAGCTCAACG ACGACAATGG CGCCGGCTCG
CTGACGGCTC TGCCCGTCAT CGAGACGCAG GGCAACGATG TTTCCGCGTT CATCCCGACC
AACGTGATCT CGATCACCGA CGGCCAGATC TTCCTTGAAA CCGATCTGTT CTACCAGGGC
ATCCGCCCGG CCGTTAACGT CGGCCTGTCG GTCTCGCGTG TCGGTTCCTC CGCCCAGATC
AAGGCGATGA AGCAGGTCGC CGGTTCGATC AAGGGCGAGC TCGCCCAGTA CCGCGAAATG
GCGGCCTTCG CACAGTTCGG TTCGGATCTC GACGCCGCGA CGCAGCGCCT GCTCAACCGC
GGTGCCCGTC TGACCGAACT CCTGAAGCAG CCGCAGTTCT CGCCGCTGAA GACGGAAGAG
CAGGTCGCGG TCATCTTTGC CGGCGTCAAT GGCTTTCTCG ATAAGCTGCC GGTCGCCGAC
GTGGGCAAGT TCGAGCAGGG TCTCCTTTCC TACATGCGTT CGGAAGGCAA GGCCGTTCTG
GATACCATCC GCACGGAAAA GGCGATCTCG GACGACACCA AGGCCAAATT GAAGGCCGCA
ATCGACAGCT TCGCCAAGTC TTTCGCCTGA
|
|---|
| Protein sequence | MDIRAAEISA ILKDQIKNFG QEAEVSEVGQ VLSVGDGIAR VYGLDNVQAG EMVEFPGGIR
GMALNLEADN VGVVIFGSDR DIKEGDTVKR TGAIVDVPVG PELLGRVVDA LGNPIDGKGP
INAKQRARVD VKAPGIIPRK SVHEPMSTGL KAIDALIPVG RGQRELVIGD RQTGKTAIIL
DTILNQKAIH DNGPEGDKLY CVYVAIGQKR STVAQFVKVL EERGALQYSI IVAATASDAA
PMQYLAPFAG CTMGEYFRDS GKHALIGYDD LSKQAVAYRQ MSLLLRRPPG REAYPGDVFY
LHSRLLERAA KLNDDNGAGS LTALPVIETQ GNDVSAFIPT NVISITDGQI FLETDLFYQG
IRPAVNVGLS VSRVGSSAQI KAMKQVAGSI KGELAQYREM AAFAQFGSDL DAATQRLLNR
GARLTELLKQ PQFSPLKTEE QVAVIFAGVN GFLDKLPVAD VGKFEQGLLS YMRSEGKAVL
DTIRTEKAIS DDTKAKLKAA IDSFAKSFA
|
|---|
| |