Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_2909 |
Symbol | |
ID | 5323786 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 3052335 |
End bp | 3054059 |
Gene Length | 1725 bp |
Protein Length | 574 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640791861 |
Product | extracellular solute-binding protein |
Protein accession | YP_001328574 |
Protein GI | 150398107 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.175958 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGACGGC ACCTTTTGAC AACGACGGCG GCCATGCTGC TGGCTTTCAC CGGCTCGGCC TTTGCCGGCA TGGACGAGGC AAAACAGTTT CTGGACAAGG AAGTCGGCGA CATGTCCTCG CTCGACCGCG CTGCCCAGGA AGCGGAAATG CAGTGGTTCG TCGATGCGGC GAAACCCTTT GCGGGCATGG AGATCAAGGT CGTCTCCGAA ACGATCACCA CCCACGAATA TGAATCGAAG GTGCTGGCCC CGGCCTTCAC TGCGATCACC GGCATCAAAA TCACCCATGA CCTGATCGGC GAAGGCGACG TTGTCGAAAA ACTGCAGACG CAGATGCAGT CGGGCGAAAA CGTCTATGAC GCCTACATCA ACGACAGCGA CCTGATCGGC ACCCACTGGC GCTACCAGCA GGCGCGAAGC CTGACCGACT TCATGGCGAA CGAGGGCAAG GACGTCACCA ATCCCAACCT CGACATCGAC GACTTCATCG GCAAGTCCTT CACCACGGCT CCGGACGGCA AGCTCTACCA GCTTCCCGAC CAGCAGTTCG CGAACCTCTA CTGGTTCCGC TACGACTGGT TCAACGACGA GAAGAACAAA GCGGATTTCA AGGCGAAGTA CGGCTACGAT CTCGGCGTTC CCGTCAACTG GTCGGCCTAC GAGGACATCG CCGAGTTCTT CACCGGCCGC GAAGTCGACG GCAAGAAGGT CTATGGCCAC ATGGACTACG GCAAGAAGGA CCCGTCGCTC GGCTGGCGCT TCACCGACGC TTGGCTCTCG ATGGCCGGCA ATGGCGACAA GGGCATTCCG AACGGCAAGC CGGTCGACGA GTGGGGCATC AAGGTCGACG AAAACTCAAG ACCCGTCGGA TCCTGCGTTG CACGCGGCGG CGATACCAAT GGCCCGGCAT CCGTCTATGC CATCCAGAAA TATCTCGACT GGATGAAGGC CTATGCACCG GCCGCTGCTC AGGGCATGAC CTTCTCGGAA TCTGGCCCCG TTCCATCGCA AGGTGAGGTC GCCCAGCAGA TGTTCACCTA TACGGCCTTC ACCGCCGATT TCGTGAAGGA AGGCCTGCCA GTCGTGAACG AGGACGGTAC GCCGAAGTGG CGTTTCGCTC CGAGCCCGCA TGGCGTCTAC TGGAAGGAGG GCATGAAGCT CGGCTATCAG GACGCCGGTT CCTGGACGCT GCTTAAGTCG ACGCCGGACG ATCGCGCCAA GGCCGCGTGG CTCTACGCGC AGTTCGTGAC CTCGAAAACG GTAGACGTGA AGAAGAGCCA TGTCGGCCTC ACCTTCATCC GTCAATCGAC GCTCGACCAT CAGAGCTTCA CCGACCGTGC GCCGAAGCTC GGCGGTCTGA TCGAGTTCTA CCGTTCGCCG GCCCGCCTGC AGTGGTCGCC GACCGGAACG AACGTCCCTG ACTATCCGAA GCTGGCACAG CTCTGGTGGC AGGCGATCGG CGATGCTTCT TCCGGTGCGA AGACCGCACA GGAGGCCATG GACTCGCTCT GCGCCGAACA GGAAAAAGTG ATGCAGCGTC TCGAGCGCGC CGGAGTCCAG GGCGAAATCG GGCCGAAGCT CGCCGATGAG CACGACCTCG AATACTGGAA CGCGGAAGCC GTCAAGGCCG GCAACCTCGC ACCGCAGCTC AAGGTCGAGA ACGAGAAGGA TAAGCCGGTC ACCGTCAATT ACGACGAACT GGTCAAGAGC TGGCAGACCA ACTGA
|
Protein sequence | MRRHLLTTTA AMLLAFTGSA FAGMDEAKQF LDKEVGDMSS LDRAAQEAEM QWFVDAAKPF AGMEIKVVSE TITTHEYESK VLAPAFTAIT GIKITHDLIG EGDVVEKLQT QMQSGENVYD AYINDSDLIG THWRYQQARS LTDFMANEGK DVTNPNLDID DFIGKSFTTA PDGKLYQLPD QQFANLYWFR YDWFNDEKNK ADFKAKYGYD LGVPVNWSAY EDIAEFFTGR EVDGKKVYGH MDYGKKDPSL GWRFTDAWLS MAGNGDKGIP NGKPVDEWGI KVDENSRPVG SCVARGGDTN GPASVYAIQK YLDWMKAYAP AAAQGMTFSE SGPVPSQGEV AQQMFTYTAF TADFVKEGLP VVNEDGTPKW RFAPSPHGVY WKEGMKLGYQ DAGSWTLLKS TPDDRAKAAW LYAQFVTSKT VDVKKSHVGL TFIRQSTLDH QSFTDRAPKL GGLIEFYRSP ARLQWSPTGT NVPDYPKLAQ LWWQAIGDAS SGAKTAQEAM DSLCAEQEKV MQRLERAGVQ GEIGPKLADE HDLEYWNAEA VKAGNLAPQL KVENEKDKPV TVNYDELVKS WQTN
|
| |