| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2870 |
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| Symbol | metH |
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| ID | 5323746 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 3003180 |
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| End bp | 3006953 |
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| Gene Length | 3774 bp |
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| Protein Length | 1257 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640791821 |
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| Product | B12-dependent methionine synthase |
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| Protein accession | YP_001328535 |
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| Protein GI | 150398068 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGCCT CCGACGACCT CTTTGGACAC GTTTCGCCCA AGCCGGATGG CTCGGAAATC
TTCCGCCAGC TCGCACAGGC GGCCGCCGAG CGTATCCTCA TCATGGACGG CGCAATGGGG
ACGGAGATCC AGCAGCTGGG TTTCGTCGAG GATCACTTCC GGGGCGAGCG TTTCGGCGCC
TGCAATTGCC ATCAGCAGGG CAACAACGAC CTTCTGACGC TCACGCAACC GAAGGCGATT
GAAGAGATAC ATTATCATTA CGCAATCGCC GGTGCCGACA TTCTGGAGAC CAACACCTTC
TCCTCGACCC GGATCGCCCA GGCCGATTAC GGCATGGAGG ACATGGTCTA CGACCTCAAT
CGCGATGGCG CGCGGTTGGC GCGGCGTGCT GCGCGGCGGG CCGAGGCAGA GGACGGCAGG
CGGCGCTTCG TGGCTGGCGC ACTCGGGCCG ACCAACCGCA CAGCCTCGAT CTCGCCGGAC
GTCAACAATC CCGGTTATCG TGCCGTCAGC TTCGATGATC TGAGGCTTGC CTATTCCGAG
CAGGTGCGTG GTCTGATCGA TGGCGGTGCC GACATCATCC TGATCGAGAC TATTTTCGAC
ACACTGAATG CCAAAGCCGC GATCTTTGCG ACGCAGGAAG TGTTCGCGGA GAAAGCTGTT
CACCTGCCGA TAATGATATC AGGCACGATC ACCGATCTTT CCGGCCGCAC ACTCTCGGGA
CAGACGCCAA CGGCTTTCTG GTATTCGGTG CGTCATGCAT CGCCGTTTAC GATCGGCCTC
AACTGCGCGC TCGGGGCCAA TGCGATGCGT GCCCATATCG ACGAGCTCTC GGCGATAGCC
GATACGCTGG TCTGCGCCTA TCCCAATGCG GGCCTGCCCA ACGAATTCGG CCAGTACGAC
GAAAGCCCCG AGCAGATGGC GGCGCAGATC GAGGGCTTCG CCCGGGACGG CCTCGTCAAT
GTCGTCGGTG GCTGTTGCGG CTCGACCCCG GCTCATATCC GCGCCATCGC CGAAGCGGTT
GCCAAATATC CGCCGCGCCG GGTGCCGGAG ACCGAACGCC TGATGCGGCT TTCCGGCCTC
GAGCCCTTCA CGCTCACCGA CGAGATCCCC TTCGTCAATG TGGGAGAACG CACCAATGTC
ACCGGCTCGG CGAAGTTCCG CAAGCTGATC ACTGCCGGGG ACTACGCCGC CGCACTCGAA
GTCGCGCGCG ATCAGGTGGC GAACGGCGCC CAGATCATCG ACGTCAACAT GGACGAAGGC
CTCATCGATT CGAAGCAGGT CATGGTCGAG TTCCTGAACC TCGTTGCCTC GGAGCCGGAT
ATCGCGCGCG TGCCCGTGAT GATCGACTCG TCCAAGTGGG AGGTCATCGA AGCAGGACTC
AAATGCGTCC AGGGCAAGGC GCTGGTGAAC TCCATCTCGC TCAAGGAAGG CGAGGAAGCG
TTCCTGTATC ACGCCCGTCT CGTGCGCGCC TATGGCGCCG CCGTCGTGGT GATGGCGTTC
GACGAGAAAG GGCAGGCCGA CACGAAGACC CGCAAGGTGG AGATCTGCCG CCGCGCCTAC
CGCTTGCTGA CGGAAGAGGT GGGCTTTCCG CCGGAGGACA TCATCTTCGA CCCGAATATC
TTCGCGGTCG CGACCGGCAT CGAGGAGCAC GACAATTACG GCGTCGACTT CATCGAGGCG
ACGCACGAGA TCGTCGCGGC GCTGCCGCAC GTCCATATCT CCGGCGGCGT GTCGAACCTG
TCCTTCTCCT TCCGCGGCAA CGAGCCCGTG CGCGAGGCGA TGCACGCCGT TTTTCTCTAC
CATGCGATCC AGGCCGGCAT GGACATGGGC ATCGTCAATG CCGGGCAGCT CGCCGTCTAT
GATGCGATCG ACGCGGAGCT GCGCGAAGCC TGCGAGGATG TCGTGCTCAA TCGCCGGTCC
GATGGAACCG AGCGCCTGTT GGAAATCGCC GAACGCTATC GCGGGCAGGG CGGGAGCCAG
GGCAGGGAGA AGGATCTAGC CTGGCGCGAA TGGCCGGTCG AGAAAAGGCT CGAGCATGCC
CTCGTCTACG GCATTACCGA ATTCATCGAA GCCGATACCG AGGAAGCCCG GCTCTCTGCC
GAGCGGCCGC TGCATGTCAT CGAAGGGCCG CTGATGGCCG GGATGAACGT GGTGGGCGAC
CTCTTCGGCT CGGGGAAGAT GTTTCTGCCG CAGGTGGTCA AATCCGCGCG CGTGATGAAG
CAGGCCGTTG CGGTGCTGCT CCCCCATATG GAGGCGGAAA AGCGTGCCAA TGGCGGCGGC
GAGGCGCGCG AGAGCGCCGG CAAGATCCTG ATGGCGACCG TCAAGGGCGA CGTGCACGAT
ATCGGCAAGA ACATCGTCGG CGTCGTGCTC GCCTGTAACA ACTACGAGAT CATCGATCTC
GGCGTCATGG TATCCTCGGC CAGGATTCTC GAAGTGGCGC GCGAGCAGAA GGTTGATATC
ATCGGCCTTT CCGGCCTCAT TACGCCATCG CTGGACGAGA TGGCGCATGT CGCTTCCGAG
CTGGAACGGG AGGGCTTCGA CCTGCCATTG CTGATTGGCG GCGCGACGAC CAGCCGCGTG
CACACGGCGG TAAAGATCAA TCCGCGCTAC AGCCTCGGCC AGACGGTCTA TGTCACGGAC
GCAAGCCGTG CCGTCGGCGT CGTATCGAGC CTGCTCTCGC CGGAGGTCCG CGACGGCTAC
AAGGAAACCA TCCGCGCGGA ATATCTCAAG GTTGCCGAGG CGCATGCGCG CAACGAAGCC
GAGAAGCGTC GTCTGCCTCT CTCGCAGGCA CGCGCGAACG CGGTAAAGAT CGATTGGGAG
GCGCATCGGC CGAAAGTGCC GTCCTTCCTC GGCACGCGCG TTTTCGACGG ATGGGATCTT
GCCGAACTCG CCCGCTATAT CGACTGGACG CCCTTCTTCC AGACCTGGGA AATGAAGGGC
GTTTATCCAC GCATCCTCGA CGACGAGCAT CAAGGGGCGG CTGCCCGCCA GCTCTTCGAA
GACGCGCAGG CGATGCTGGC GCAGATCGTG GCGGAAAAAT GGTTCGCCCC CAAAGCCGTG
GTCGGCTTCT GGCCGGCCGG CAGCGTCGGC GACGACGTCC GCCTCTTCAC AGATGAGACG
CGCAAAGGTG AGCTTGCCAC CTTGTTCACG CTCCGCCAGC AACTGGTGAA AAGAGACGGA
CGTCCGAATG TCGCCCTGGC CGATTTCGTT GCTCCGGCCG AGAGCGGCAA GCGGGACTAT
GCCGGCGCTT TCGTCGTCAC CGCCGGTATC GAGGAGGTGG CGATCGCCGA ACGCTTCGAG
CGCGCCAACG ACGACTATTC TTCGATCATG GTCAAGGCGC TGGCCGACCG CTTCGCCGAG
GCCTTCGCCG AGCGGATGCA TGAATATGTG CGCAAGGAGC TTTGGGGCTA TGCCGCGGAT
GAAGCCTTCA CGCCGCAGGA ATTGATCGGC GAGCCCTATG CCGGCATTCG GCCTGCTCCC
GGCTATCCGG CACAGCCCGA CCATACCGAG AAGGAGACGC TTTTCCGGCT CCTGAATGCC
GAGGCAGCGA TCGGCGTGAA GCTCACCGAG AGCTATGCCA TGTGGCCGGG CTCCTCTGTA
TCTGGCCTCT ATATCGGTCA CCCCGATTCC TACTATTTCG GCGTCGCCAA GATCGAGCGC
GATCAGGTGG AAGACTATGC CGAGCGCAAG CAGATGAGCG TGCGGGAAGT CGAGCGCTGG
CTGTCGCCGG TCCTCAACTA CGTGCCGGCC CCGGAGGCCG AGGCGGCGGA ATAG
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| Protein sequence | MSASDDLFGH VSPKPDGSEI FRQLAQAAAE RILIMDGAMG TEIQQLGFVE DHFRGERFGA
CNCHQQGNND LLTLTQPKAI EEIHYHYAIA GADILETNTF SSTRIAQADY GMEDMVYDLN
RDGARLARRA ARRAEAEDGR RRFVAGALGP TNRTASISPD VNNPGYRAVS FDDLRLAYSE
QVRGLIDGGA DIILIETIFD TLNAKAAIFA TQEVFAEKAV HLPIMISGTI TDLSGRTLSG
QTPTAFWYSV RHASPFTIGL NCALGANAMR AHIDELSAIA DTLVCAYPNA GLPNEFGQYD
ESPEQMAAQI EGFARDGLVN VVGGCCGSTP AHIRAIAEAV AKYPPRRVPE TERLMRLSGL
EPFTLTDEIP FVNVGERTNV TGSAKFRKLI TAGDYAAALE VARDQVANGA QIIDVNMDEG
LIDSKQVMVE FLNLVASEPD IARVPVMIDS SKWEVIEAGL KCVQGKALVN SISLKEGEEA
FLYHARLVRA YGAAVVVMAF DEKGQADTKT RKVEICRRAY RLLTEEVGFP PEDIIFDPNI
FAVATGIEEH DNYGVDFIEA THEIVAALPH VHISGGVSNL SFSFRGNEPV REAMHAVFLY
HAIQAGMDMG IVNAGQLAVY DAIDAELREA CEDVVLNRRS DGTERLLEIA ERYRGQGGSQ
GREKDLAWRE WPVEKRLEHA LVYGITEFIE ADTEEARLSA ERPLHVIEGP LMAGMNVVGD
LFGSGKMFLP QVVKSARVMK QAVAVLLPHM EAEKRANGGG EARESAGKIL MATVKGDVHD
IGKNIVGVVL ACNNYEIIDL GVMVSSARIL EVAREQKVDI IGLSGLITPS LDEMAHVASE
LEREGFDLPL LIGGATTSRV HTAVKINPRY SLGQTVYVTD ASRAVGVVSS LLSPEVRDGY
KETIRAEYLK VAEAHARNEA EKRRLPLSQA RANAVKIDWE AHRPKVPSFL GTRVFDGWDL
AELARYIDWT PFFQTWEMKG VYPRILDDEH QGAAARQLFE DAQAMLAQIV AEKWFAPKAV
VGFWPAGSVG DDVRLFTDET RKGELATLFT LRQQLVKRDG RPNVALADFV APAESGKRDY
AGAFVVTAGI EEVAIAERFE RANDDYSSIM VKALADRFAE AFAERMHEYV RKELWGYAAD
EAFTPQELIG EPYAGIRPAP GYPAQPDHTE KETLFRLLNA EAAIGVKLTE SYAMWPGSSV
SGLYIGHPDS YYFGVAKIER DQVEDYAERK QMSVREVERW LSPVLNYVPA PEAEAAE
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