Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_2795 |
Symbol | |
ID | 5323665 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 2916292 |
End bp | 2917500 |
Gene Length | 1209 bp |
Protein Length | 402 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640791740 |
Product | secretion protein HlyD family protein |
Protein accession | YP_001328460 |
Protein GI | 150397993 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.758551 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGCTC CCAGCTCATC CAGCGCTGCC CGTGTCCGTC CCGTCGGCGA CGATTTCGAA GTCGTGGACG ATCAGAAGGC CGAGGCCAAG AGCCCCTCGA CCGACGCCGC TACCGATGAG CAGGCGGGCG AGCAGATCGC TACACCTCCT AAAAAACGTC GCAAGATCCT TCCGGTTCTG GGCATCGTGC TCCTCGGTGC CGCCGCCTGG TACGGCTATG ATTGGTGGAC CAATGGGCGC TTCCTGGTCT CGACCGACGA CGCGTACATA GAAGGCGACA TTGCGACGAT CTCGCCGAAG GTTTCCGGCT ATATTGCCAA GGTCGACGTC GTCGCCAACC AGCATGTGAA GGCCGGCGAC CCGCTCGTCA CGCTCGACGA CGGCGATTAC CGCATCGCGG CGGAGCAGGC GGAGGCGCAG ATCGCCACAC AGAAGCTGGC GCTCAGCCGT TTCGACGCAC AGATCGCCGG GGCGAAGGCG AGCCTTACTC AAACCGAAGC GCAGAAGAAG GCGCTCGAGG CGACGGTGCG CGGCGCGGAA CTGGCACAGA GGCGCGCCAG CGAACTGCAG TCGAAGTCAT TCGGTACGGA TGCTTCTCTC GACAGCGCCC AGGTGGCGCT CGATCAAGCC CGTGCAAATC TCGCCGGCGC CGAGGCCAAT ATCGCGGCTG CCAAGGCCAA CATCACCGTG CTCGAGGCCC AGCGCAACGA GGCTGAAAGC ACGATCCATT CGCTGGAGCT TGCCCGCGAC AAGGCAAGTC GCGATCTGGG CTTCACCGTG CTCAAGGCAC CCTATGACGG CGTGATAGGC AACGTCGCGG TCCAGGTCGG CGATCTCGTT TCGGCAGGCC AGCGGCTCGC CGCGCTCGTG CCCACCGATC AGCTCTATAT CGACGCCAAC TTCAAGGAGA CGCAGATCGC GCATCTGGTG CCGGGTTCCA AGGTTGAGAT CCATGTGGAC GCCTATGAGG ATCGCCCGAT CGAAGGCACC GTGGCATCGA TCTCGCCGGC CTCCGGCTCG GTCTTCTCGC TGCTGCCCGC CGAAAACGCG ACGGGCAACT TCACCAAGGT CATCCAGCGC GTTCCGGTGC GCATTACCTT GCCGGCCGAC GTGCTGGCCG AGGGACATCT GCGCGCGGGT CTGAGCGTAG TCGTAGACGT CGATACACGC ACTGCACCGG AACAGTCGAA GCTCGCTCAG GCGAAGTAA
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Protein sequence | MSAPSSSSAA RVRPVGDDFE VVDDQKAEAK SPSTDAATDE QAGEQIATPP KKRRKILPVL GIVLLGAAAW YGYDWWTNGR FLVSTDDAYI EGDIATISPK VSGYIAKVDV VANQHVKAGD PLVTLDDGDY RIAAEQAEAQ IATQKLALSR FDAQIAGAKA SLTQTEAQKK ALEATVRGAE LAQRRASELQ SKSFGTDASL DSAQVALDQA RANLAGAEAN IAAAKANITV LEAQRNEAES TIHSLELARD KASRDLGFTV LKAPYDGVIG NVAVQVGDLV SAGQRLAALV PTDQLYIDAN FKETQIAHLV PGSKVEIHVD AYEDRPIEGT VASISPASGS VFSLLPAENA TGNFTKVIQR VPVRITLPAD VLAEGHLRAG LSVVVDVDTR TAPEQSKLAQ AK
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